WBGene00003681 | SMap | S_parent | Sequence | Y15E3A |
| Identity | Version | 1 |
| | Name | CGC_name | nhr-91 | Person_evidence | WBPerson600 |
| | | Sequence_name | Y15E3A.1 |
| | | Molecular_name | Y15E3A.1a |
| | | | Y15E3A.1a.1 |
| | | | CE27779 |
| | | | Y15E3A.1b |
| | | | CE38001 |
| | | | Y15E3A.1a.2 |
| | | | Y15E3A.1a.3 |
| | | | Y15E3A.1a.4 |
| | | | Y15E3A.1b.1 |
| | | | Y15E3A.1b.2 |
| | | Other_name | CELE_Y15E3A.1 | Accession_evidence | NDB | BX284606 |
| | | Public_name | nhr-91 |
| | DB_info | Database | AceView | gene | XP933 |
| | | | WormQTL | gene | WBGene00003681 |
| | | | WormFlux | gene | WBGene00003681 |
| | | | NDB | locus_tag | CELE_Y15E3A.1 |
| | | | Panther | gene | CAEEL|WormBase=WBGene00003681|UniProtKB=Q9U2R6 |
| | | | | family | PTHR24083 |
| | | | NCBI | gene | 181621 |
| | | | RefSeq | protein | NM_001392897.1 |
| | | | | | NM_001029782.6 |
| | | | SwissProt | UniProtAcc | Q9U2R6 |
| | | | TREEFAM | TREEFAM_ID | TF350737 |
| | | | UniProt_GCRP | UniProtAcc | Q9U2R6 |
| | Species | Caenorhabditis elegans |
| | History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace |
| | Status | Live |
| Gene_info | Biotype | SO:0001217 |
| | Gene_class | nhr |
| | Allele | WBVar01214242 |
| | | WBVar01214243 |
| | | WBVar01214244 |
| | | WBVar01499519 |
| | | WBVar01214245 |
| | | WBVar01214246 |
| | | WBVar02072084 |
| | | WBVar01499710 |
| | | WBVar01573291 |
| | | WBVar01528378 |
| | | WBVar00086312 |
| | | WBVar01429535 |
| | | WBVar02145290 |
| | | WBVar01679797 |
| | | WBVar00313897 |
| | | WBVar02141190 |
| | | WBVar01553249 |
| | | WBVar01942354 |
| | | WBVar01942355 |
| | | WBVar01553250 |
| | | WBVar00221782 |
| | | WBVar01946515 |
| | | WBVar00221783 |
| | | WBVar02050708 |
| | | WBVar01825354 |
| | | WBVar01488243 |
| | | WBVar01214195 |
| | | WBVar01214196 |
| | | WBVar01214197 |
| | | WBVar01214198 |
| | | WBVar01214199 |
| | | WBVar02151196 |
| | | WBVar01214200 |
| | | WBVar01214201 |
| | | WBVar01214202 |
| | | WBVar01214203 |
| | | WBVar01214204 |
| | | WBVar01214205 |
| | | WBVar01214206 |
| | | WBVar01214207 |
| | | WBVar01214208 |
| | | WBVar01214209 |
| | | WBVar01214210 |
| | | WBVar01214211 |
| | | WBVar01214212 |
| | | WBVar02140679 |
| | | WBVar01214213 |
| | | WBVar02140680 |
| | | WBVar01955364 |
| | | WBVar01214214 |
| | | WBVar02140681 |
| | | WBVar01955365 |
| | | WBVar01214215 |
| | | WBVar01214216 |
| | | WBVar01214217 |
| | | WBVar01214218 |
| | | WBVar01214219 |
| | | WBVar01214220 |
| | | WBVar00526342 |
| | | WBVar00526343 |
| | | WBVar01214221 |
| | | WBVar01214222 |
| | | WBVar00526344 |
| | | WBVar01214223 |
| | | WBVar00526345 |
| | | WBVar01214224 |
| | | WBVar00526346 |
| | | WBVar01214225 |
| | | WBVar00526347 |
| | | WBVar00526348 |
| | | WBVar01214226 |
| | | WBVar00526349 |
| | | WBVar01214227 |
| | | WBVar00526350 |
| | | WBVar01214228 |
| | | WBVar01214229 |
| | | WBVar00526351 |
| | | WBVar01214230 |
| | | WBVar00526352 |
| | | WBVar00526353 |
| | | WBVar01214231 |
| | | WBVar00274810 |
| | | WBVar01214232 |
| | | WBVar01214233 |
| | | WBVar01214234 |
| | | WBVar00296328 |
| | | WBVar01214235 |
| | | WBVar01214236 |
| | | WBVar01214237 |
| | | WBVar01214238 |
| | | WBVar01498960 |
| | | WBVar01214239 |
| | | WBVar01214240 |
| | | WBVar01214241 |
| | | WBVar01500067 |
| | RNASeq_FPKM (74) |
| | GO_annotation (19) |
| | Ortholog (35) |
| | Paralog (42) |
| | Structured_description | Concise_description | nhr-91 encodes a conserved nuclear receptor that is orthologous to members of the NR6 subfamily of nuclear receptors that includes Drosophila HR4 and human germ cell nuclear factor (GCNF, OMIM:600281, human and mouse GCNF are expressed primarily in the testis); by homology, NHR-91 is predicted to function as a transcription factor that may activate or repress transcription in response to a hormonal signal; however, as loss of nhr-91 activity via RNAi does not result in any obvious abnormalities, the precise role of NHR-91 in C. elegans development and/or behavior is not yet known; nhr-91 is expressed in anterior neurons, seam cells, excretory cells, the spermatheca, and the developing vulva. | Paper_evidence | WBPaper00005573 |
| | | | | | WBPaper00006412 |
| | | | | Curator_confirmed | WBPerson1843 |
| | | | | Date_last_updated | 17 Jun 2004 00:00:00 |
| | | Automated_description | Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in anterior ganglion; excretory cell; seam cell; spermatheca; and vulva. Is an ortholog of human NR6A1 (nuclear receptor subfamily 6 group A member 1). | Paper_evidence | WBPaper00065943 |
| | | | | Curator_confirmed | WBPerson324 |
| | | | | | WBPerson37462 |
| | | | | Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase |
| | | | | Date_last_updated | 29 Nov 2023 00:00:00 |
| Molecular_info | Corresponding_CDS | Y15E3A.1a |
| | | Y15E3A.1b |
| | Corresponding_CDS_history | Y15E3A.1:wp51 |
| | | Y15E3A.1:wp138 |
| | Corresponding_transcript | Y15E3A.1a.1 |
| | | Y15E3A.1a.2 |
| | | Y15E3A.1a.3 |
| | | Y15E3A.1a.4 |
| | | Y15E3A.1b.1 |
| | | Y15E3A.1b.2 |
| | Other_sequence | ES566927.1 |
| | | EX499800.1 |
| | | TSC10314_1 |
| | | JI168333.1 |
| | | MH04569 |
| | | MHC02010_1 |
| | | TSC13709_1 |
| | Associated_feature (24) |
| | Transcription_factor | WBTranscriptionFactor000197 |
| Experimental_info | RNAi_result | WBRNAi00063675 | Inferred_automatically | RNAi_primary |
| | | WBRNAi00036652 | Inferred_automatically | RNAi_primary |
| | | WBRNAi00055550 | Inferred_automatically | RNAi_primary |
| | | WBRNAi00084686 | Inferred_automatically | RNAi_primary |
| | | WBRNAi00020062 | Inferred_automatically | RNAi_primary |
| | | WBRNAi00070205 | Inferred_automatically | RNAi_primary |
| | | WBRNAi00084695 | Inferred_automatically | RNAi_primary |
| | | WBRNAi00063674 | Inferred_automatically | RNAi_primary |
| | | WBRNAi00061357 | Inferred_automatically | RNAi_primary |
| | | WBRNAi00063686 | Inferred_automatically | RNAi_primary |
| | | WBRNAi00020061 | Inferred_automatically | RNAi_primary |
| | Expr_pattern | Expr2868 |
| | | Expr1012698 |
| | | Expr1031711 |
| | | Expr1159050 |
| | | Expr2014243 |
| | | Expr2032484 |
| | Drives_construct | WBCnstr00010998 |
| | | WBCnstr00017594 |
| | | WBCnstr00017984 |
| | | WBCnstr00035950 |
| | Construct_product | WBCnstr00035950 |
| | Microarray_results (29) |
| | Expression_cluster | WBPaper00032976:non_compensated_genes |
| | | WBPaper00036375:enriched_in_PVD_OLL |
| | | WBPaper00037682:sma-2_upregulated |
| | | WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed |
| | | WBPaper00037950:hypodermis_L1-larva_expressed |
| | | WBPaper00037950:hypodermis_L3-L4-larva_expressed |
| | | WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray |
| | | WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray |
| | | WBPaper00041222:unc-120(st364)_downregulated |
| | | WBPaper00044578:reduced-humidity_downregulated_microarray |
| | | WBPaper00044736:oscillating_dev_expression |
| | | WBPaper00045417:128Q-huntingtin_downreglated |
| | | WBPaper00045521:Gender_Neutral |
| | | WBPaper00046121:ecdoderm_unique |
| | | WBPaper00048611:MnCl2_upregulated |
| | | WBPaper00048988:neuron_expressed |
| | | WBPaper00049626:UNC-75_target |
| | | WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_24-cell-embryo |
| | | WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_100-cell-embryo |
| | | WBPaper00050370:dpy-21(e428)_L3_upregulated |
| | | WBPaper00050488:adult_vs_dauer_regulated_N2_20C |
| | | WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C |
| | | WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C |
| | | WBPaper00050514:CEBP-1_interacting |
| | | WBPaper00050801:DAF-12_dauer_regulome |
| | | WBPaper00050801:DAF-16_dauer_regulome |
| | | WBPaper00050801:DPY-21_dauer_regulome |
| | | WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult |
| | | WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult |
| | | WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult |
| | | WBPaper00050990:body-muscle_expressed |
| | | WBPaper00050990:hypodermis_expressed |
| | | WBPaper00051558:aging_regulated |
| | | WBPaper00053184:sma-2(rax5)_upregulated |
| | | WBPaper00053184:sma-4(rax3)_upregulated |
| | | WBPaper00053295:lin-22(ot269)_upregulated |
| | | WBPaper00053302:zidovudine_72h_regulated |
| | | WBPaper00053321:PGCs_depleted_NuGen |
| | | WBPaper00053388:dauer_regulated_Cluster5 |
| | | WBPaper00054758:alg-1(gk204)_upregulated |
| | | WBPaper00055354:Rapamycin_downregulated |
| | | WBPaper00055482:pmt-2(RNAi)_upregulated |
| | | WBPaper00055862:antimycin_damt-1(gk961032)_regulated |
| | | WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated |
| | | WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047) |
| | | WBPaper00056090:E.faecalis_upregulated_N2 |
| | | WBPaper00056165:MINA-1_interacting_mRNA |
| | | WBPaper00056169:rrf-3(pk1426)_downregulated_L4 |
| | | WBPaper00056169:rrf-3(pk1426)_upregulated_embryo |
| | | WBPaper00056169:rrf-3(pk1426)_upregulated_L2 |
| | | WBPaper00056284:ints-1(RNAi)_downregulated |
| | | WBPaper00056443:sek-1(km4)_upregulated |
| | | WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated |
| | | WBPaper00056471:S.aureus-4h_upregulated_N2 |
| | | WBPaper00056617:adr-1_upregulated_L4_transcript |
| | | WBPaper00056826:SGP_biased |
| | | WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C |
| | | WBPaper00057041:spc-1(cas971)_upregulated |
| | | WBPaper00057041:unc-70(cas983)_upregulated |
| | | WBPaper00057068:numr-1(RNAi)_downregulated |
| | | WBPaper00057347:nhr-14(tm1473)_downreglated |
| | | WBPaper00058598:mex-1(or286)_upregulated |
| | | WBPaper00058598:mex-3(eu149)_upregulated |
| | | WBPaper00058598:sin-3(tm1276)_downregulated |
| | | WBPaper00058598:spn-4(tm291)_upregulated |
| | | WBPaper00058691:set-2(bn129)_upregulated |
| | | WBPaper00059421:daf-1(m40);daf-3(mgDf90)_downregulated |
| | | WBPaper00059421:daf-3(mgDf90)_downregulated |
| | | WBPaper00059471:EGL-43_interacting |
| | | WBPaper00059664:srbc-48(ac23)_upregulated |
| | | WBPaper00060014:set-2(tm1630)_downregulated |
| | | WBPaper00060084:cco-1(RNAi)_downregulated_N2 |
| | | WBPaper00060273:isp-1(qm150)_upregulated |
| | | WBPaper00060445:nfki-1(cer1)_downregulated_L4 |
| | | WBPaper00060445:nfki-1(cer1)_ikb-1(nr2027)_downregulated_L4 |
| | | WBPaper00060661:sensory-neuron_enriched |
| | | WBPaper00060811:L1_vs_adult_upregulated_neural |
| | | WBPaper00060909:atfs-1(cmh15)_downregulated |
| | | WBPaper00061040:FW1256_downregulated |
| | | WBPaper00061081:E.faecalis_upregulated_N2 |
| | | WBPaper00061203:let-418(n3536)_upregulated |
| | | WBPaper00061203:sin-3(tm1276)_upregulated |
| | | WBPaper00061203:spr-1(ok2144)_upregulated |
| | | WBPaper00061340:ADEsh |
| | | WBPaper00061340:CEPso |
| | | WBPaper00061340:F_U |
| | | WBPaper00061340:ILsh_OLLsh_OLQsh |
| | | WBPaper00061340:ILso |
| | | WBPaper00061340:Neuroblast_ADE_ADA |
| | | WBPaper00061340:Neuroblast_ALM_BDU |
| | | WBPaper00061340:Neuroblast_HSN_PHB |
| | | WBPaper00061340:Neuroblast_PVC_LUA |
| | | WBPaper00061340:PLM_ALN_grandparent |
| | | WBPaper00061340:PLM_ALN_great_grandparent |
| | | WBPaper00061340:Rectal_cell |
| | | WBPaper00061341:28C_24h_upregulated |
| | | WBPaper00061341:28C_48h_upregulated |
| | | WBPaper00061439:unc-30(ok613)_upregulated |
| | | WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection |
| | | WBPaper00061466:nath-10(icb102)_downregulated |
| | | WBPaper00061479:hda-1(ne4752)_upregulated |
| | | WBPaper00061479:mep-1(ne4629)_upregulated |
| | | WBPaper00061479:ubc-9(ne4833)_upregulated |
| | | WBPaper00061527:R07G3.8_9125-ric-4_17408 |
| | | WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR |
| | | WBPaper00062156:jmjd-5(zr1234)_upregulated |
| | | WBPaper00062159:hda-2(ok1479)_upregulated |
| | | WBPaper00062193:skn-1(RNAi)_upregulated |
| | | WBPaper00062325:muscle_depleted_coding-RNA |
| | | WBPaper00062440:crh-1(n3315)_downregulated |
| | | WBPaper00062446:nhr-8(hd117)_upregulated |
| | | WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141) |
| | | WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20) |
| | | WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141) |
| | | WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141) |
| | | WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20) |
| | | WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141) |
| | | WBPaper00064306:Agaro-oligosaccharides_upregulated |
| | | WBPaper00064532:pals-25(icb98)_downregulated |
| | | WBPaper00064721:fasn-1(g14)_downregulated_starved |
| | | WBPaper00064871:hypoxia_downregulated_F2 |
| | | WBPaper00064933:bcf-1(ylf1)_upregulated_transcript |
| | | WBPaper00065096:25C_vs_20C_downregulated |
| | | WBPaper00065746:eat-2(ad1113)_downregulated |
| | | WBPaper00065749:Heat-Shock_downregulated_N2 |
| | | WBPaper00065835:Day11_vs_Day1_upregulated |
| | | WBPaper00065841:5_0 |
| | | WBPaper00065841:80_0 |
| | | WBPaper00065841:91_0 |
| | | WBPaper00066062:xrep-4(lax137)_upregulated |
| | | WBPaper00066110:tetraploid_vs_diploid_upregulated |
| | | cgc4489_group_8 |
| | | WBPaper00030985:Photorhabdus_luminescens_upregulated |
| | | WBPaper00031252:AIN-1_IP_enriched |
| | | WBPaper00031252:AIN-2_IP_enriched |
| | | WBPaper00031532:Larva_Pan_Neuronal_Depleted |
| | | WBPaper00031832:slr-2_regulated |
| | | WBPaper00032948:FedUp |
| | | WBPaper00034739:N2lessDR1350 |
| | | WBPaper00034739:RIL17lessRIL14 |
| | | WBPaper00035084:L1_enriched_AIN-2_IP |
| | | WBPaper00035084:L2_enriched_AIN-2_IP |
| | | WBPaper00035084:L3_enriched_AIN-2_IP |
| | | WBPaper00035084:L4_enriched_AIN-2_IP |
| | | WBPaper00035588:alg-1(-)_upregulated |
| | | WBPaper00036130:mir-243_up_regulated |
| | | WBPaper00036286:Pattern_G |
| | | WBPaper00040185:nhr-23(RNAi)_downregulated |
| | | WBPaper00040210:Chlorpyrifos_16C_regulated |
| | | WBPaper00040858:eQTL_regulated_old |
| | | WBPaper00041174:environmental |
| | | WBPaper00041174:genotypic |
| | | WBPaper00041174:genotypic_and_environmental |
| | | WBPaper00041939:control_vs_UVC-EtBr-exposed_48h |
| | | WBPaper00046548:dafachronic-acid_upregulated |
| | | WBPaper00047070:N2_starvation_downregulated |
| | | WBPaper00047070:N2_UV_upregulated |
| | | WBPaper00048989:N2_allantoin_upregulated |
| | | WBPaper00053236:Starvation_regulated_GR1307 |
| | | WBPaper00053236:Starvation_regulated_N2 |
| | | WBPaper00055899:nitroguanidine_regulated |
| | | [cgc5376]:let-60(G12V)-regulated_genes |
| | Interaction (76) |
| Map_info | Map | X | Position | 22.4209 | Error | 0.024648 |
| | Positive | Positive_clone | Y15E3A | Inferred_automatically | From CDS info |
| | | | | | From sequence, transcript, pseudogene data |
| | Pseudo_map_position |
| Reference (11) |
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission |
| Method | Gene |