WormBase Tree Display for Variation: WBVar00221782
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| WBVar00221782 | Name | Public_name | WBVar00221782 | ||
|---|---|---|---|---|---|
| Other_name | pas33558 | ||||
| cewivar00118219 | |||||
| Y15E3A.1b.2:c.-205+1197A>G | |||||
| Y15E3A.1a.2:c.356+1197A>G | |||||
| Y15E3A.1a.4:c.356+1197A>G | |||||
| Y15E3A.1a.1:c.356+1197A>G | |||||
| Y15E3A.1a.3:c.356+1197A>G | |||||
| HGVSg | CHROMOSOME_X:g.15311039A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | Y15E3A | |
| Flanking_sequences | gtttggaaggaggtgaagtcggtagtggaagtgcactttgaatcggtttagacggttttctctaggtcacacgcaccataagaacttgtttctttttttttcaatgtgttactataaaagtgatactatctgaataaaccctaaatcataaacccttaaaaaaatatttttttaactcacaatttttccatttacagcataaacgttcccaaaattataggcgctcattgtaaatatttcatctcagcttgctgtaaatatttctatttgactgtactgttgtaaagaactgtgattttt | gttgatgtccgtcgaaataattatctgaataaaaaaaaacgcaattgacccgcacttacgataacaatcaagctatttcacaaaaacgggagagctgcgaaagttcccccgaaagttcagaacggccttcctaagataacaatcagtgtaccacaccgtactcaaagtacagaggacactcggataacgatcaaagtaggtttcagtaatcgacagctcagttagagaaagttcaagtaatacatattagtctatatcattatcaatcggacatattgtctctccggaaaaaaatgtcgg | |||
| Mapping_target | Y15E3A | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (24) | |||||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00003681 | |||
| Transcript | Y15E3A.1a.4 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y15E3A.1a.4:c.356+1197A>G | ||||
| Intron_number | 4/10 | ||||
| Y15E3A.1a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y15E3A.1a.2:c.356+1197A>G | ||||
| Intron_number | 4/10 | ||||
| Y15E3A.1b.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y15E3A.1b.2:c.-205+1197A>G | ||||
| Intron_number | 3/9 | ||||
| Y15E3A.1a.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y15E3A.1a.3:c.356+1197A>G | ||||
| Intron_number | 4/10 | ||||
| Y15E3A.1a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y15E3A.1a.1:c.356+1197A>G | ||||
| Intron_number | 4/10 | ||||
| Method | WGS_Pasadena_Quinlan |
