WormBase Tree Display for Variation: WBVar01429535

WBVar01429535 Name: Public_name: tm4527
    Other_name: Y15E3A.1a.4:c.663+32_686delinsGACCCTGCAGAGCGATATGTAG
      Y15E3A.1a.1:c.663+32_686delinsGACCCTGCAGAGCGATATGTAG
      Y15E3A.1a.3:c.663+32_686delinsGACCCTGCAGAGCGATATGTAG
      Y15E3A.1b.2:c.171+32_194delinsGACCCTGCAGAGCGATATGTAG
      Y15E3A.1a.2:c.663+32_686delinsGACCCTGCAGAGCGATATGTAG
      Y15E3A.1b.1:c.171+32_194delinsGACCCTGCAGAGCGATATGTAG
    HGVSg: CHROMOSOME_X:g.15313120_15313387delinsGACCCTGCAGAGCGATATGTAG
  Sequence_details: SMap: S_parent: Sequence: Y15E3A
    Flanking_sequences: tgagtgagcacttgcagagcgatatgtagt agaccggctcatcaacctaaaaggactccg
    Mapping_target: Y15E3A
    Source_location: 7 CHROMOSOME_X 15313119 15313388 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: GACCCTGCAGAGCGATATGTAG
      Deletion
    PCR_product: tm4527_external
      tm4527_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 4527
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00003681
    Transcript: Y15E3A.1a.4 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y15E3A.1a.4:c.663+32_686delinsGACCCTGCAGAGCGATATGTAG
        cDNA_position: ?-696
        CDS_position: ?-686
        Protein_position: ?-229
        Intron_number: 7/10
        Exon_number: 8/11
      Y15E3A.1b.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y15E3A.1b.1:c.171+32_194delinsGACCCTGCAGAGCGATATGTAG
        cDNA_position: ?-330
        CDS_position: ?-194
        Protein_position: ?-65
        Intron_number: 4/7
        Exon_number: 5/8
      Y15E3A.1a.2 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y15E3A.1a.2:c.663+32_686delinsGACCCTGCAGAGCGATATGTAG
        cDNA_position: ?-690
        CDS_position: ?-686
        Protein_position: ?-229
        Intron_number: 7/10
        Exon_number: 8/11
      Y15E3A.1b.2 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y15E3A.1b.2:c.171+32_194delinsGACCCTGCAGAGCGATATGTAG
        cDNA_position: ?-752
        CDS_position: ?-194
        Protein_position: ?-65
        Intron_number: 6/9
        Exon_number: 7/10
      Y15E3A.1a.3 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y15E3A.1a.3:c.663+32_686delinsGACCCTGCAGAGCGATATGTAG
        cDNA_position: ?-696
        CDS_position: ?-686
        Protein_position: ?-229
        Intron_number: 7/10
        Exon_number: 8/11
      Y15E3A.1a.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y15E3A.1a.1:c.663+32_686delinsGACCCTGCAGAGCGATATGTAG
        cDNA_position: ?-690
        CDS_position: ?-686
        Protein_position: ?-229
        Intron_number: 7/10
        Exon_number: 8/11
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 5465/5466-GACCCTGCAGAGCGATATGTAG-5733/5734 (268 bp deletion + 22 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele