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WormBase Tree Display for Gene: WBGene00154000

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Name Class

WBGene00154000SMapS_parentSequenceCbre_Contig516
IdentityVersion2
NameCGC_nameCbn-sgt-1.2From_analysisInferred_from_orthology
Sequence_nameCBN15275
Molecular_nameCBN15275
CBN15275.1
CN06492
Other_nameCBN15275
Cbn-sgt-1From_analysisInferred_from_orthology
Public_nameCbn-sgt-1.2
SpeciesCaenorhabditis brenneri
HistoryVersion_change130 Oct 2008 10:39:28WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCbn-sgt-1
220 Mar 2018 10:26:12WBPerson4025Name_changeCGC_nameCbn-sgt-1.2
Other_nameCbn-sgt-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsgt
RNASeq_FPKMWBls:0000002 (11)
WBls:000000416.5215From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
8.26075From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
27.8815From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
34.5494From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
37.0258From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
72.2176From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
78.5059From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
WBls:000003813.8759From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
16.7554From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
19.635From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (17)
WBls:000010116.5215From_analysisRNASeq.brenneri.total_over_all_stages.control_median
25.4683From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
OrthologWBGene00019893Caenorhabditis elegansFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00022722Caenorhabditis elegansFrom_analysisTreeFam
WBGene00025351Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00055177Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00057482Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00122646Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00130978Caenorhabditis japonicaFrom_analysisTreeFam
CBOVI.g6725Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g544Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g9108Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g8582Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g16384Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g17238Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g7426Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g9763Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g15815Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g29195Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g5118Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00428.g10743Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_16372.g25348Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-sgt-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g11186Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g11203Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00182.g6467Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_05949Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_005901Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02455Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g14514Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20086200Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00117732Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00225489Brugia malayiFrom_analysisWormBase-Compara
chrII_pilon.g4362Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00247640Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00297457Trichuris murisFrom_analysisWormBase-Compara
WBGene00301108Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00142288Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00152800Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00164684Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
GeneACeDB-Compara
WBGene00139131Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00139373Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00153346Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00153413Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00161244Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00191386Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00192704Caenorhabditis brenneriFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Homodimerisation domain of SGTA; Tetratricopeptide repeat; Tetratricopeptide repeat 1; SGTA, homodimerisation domain; and Tetratricopeptide-like helical domain superfamily. Is an ortholog of C. elegans sgt-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN15275
Corresponding_transcriptCBN15275.1
Other_sequence (58)
MethodGene