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WormBase Tree Display for Gene: WBGene00154000

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Name Class

WBGene00154000SMapS_parentSequenceCbre_Contig516
IdentityVersion2
NameCGC_nameCbn-sgt-1.2From_analysisInferred_from_orthology
Sequence_nameCBN15275
Molecular_nameCBN15275
CBN15275.1
CN06492
Other_nameCBN15275
Cbn-sgt-1From_analysisInferred_from_orthology
Public_nameCbn-sgt-1.2
SpeciesCaenorhabditis brenneri
HistoryVersion_change130 Oct 2008 10:39:28WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCbn-sgt-1
220 Mar 2018 10:26:12WBPerson4025Name_changeCGC_nameCbn-sgt-1.2
Other_nameCbn-sgt-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsgt
RNASeq_FPKMWBls:000000210.601From_analysisRNASeq.brenneri.WBls:0000002.control_median
10.7254From_analysisRNASeq.brenneri.WBls:0000002.control_mean
12.1024From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
14.9979From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
17.5916From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
18.5439From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
23.0612From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
4.40752From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
7.44962From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
9.09954From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
WBls:000000416.5215From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
8.26075From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
27.8815From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
34.5494From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
37.0258From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
72.2176From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
78.5059From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
WBls:000003813.8759From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
16.7554From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
19.635From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:000004110.9381From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
11.4306From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
13.6913From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
17.4597From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
23.0507From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
23.3957From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
27.1775From_analysisRNASeq.brenneri.WBls:0000041.control_median
30.9592From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
31.2093From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
39.5145From_analysisRNASeq.brenneri.WBls:0000041.control_mean
46.591From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
77.5215From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
77.732From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
79.2271From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
91.2215From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
97.8041From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
WBls:000010116.5215From_analysisRNASeq.brenneri.total_over_all_stages.control_median
25.4683From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
OrthologWBGene00019893Caenorhabditis elegansFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00022722Caenorhabditis elegansFrom_analysisTreeFam
WBGene00025351Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00055177Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00057482Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00122646Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00130978Caenorhabditis japonicaFrom_analysisTreeFam
CBOVI.g6725Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g544Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g9108Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g8582Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g16384Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g17238Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g7426Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g9763Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g15815Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g29195Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g5118Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00428.g10743Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_16372.g25348Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-sgt-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g11186Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g11203Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00182.g6467Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_05949Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_005901Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02455Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g14514Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20086200Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00117732Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00225489Brugia malayiFrom_analysisWormBase-Compara
chrII_pilon.g4362Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00247640Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00297457Trichuris murisFrom_analysisWormBase-Compara
WBGene00301108Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00142288Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00152800Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00164684Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
GeneACeDB-Compara
WBGene00139131Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00139373Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00153346Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00153413Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00161244Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00191386Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00192704Caenorhabditis brenneriFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Homodimerisation domain of SGTA; Tetratricopeptide repeat; Tetratricopeptide repeat 1; SGTA, homodimerisation domain; and Tetratricopeptide-like helical domain superfamily. Is an ortholog of C. elegans sgt-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN15275
Corresponding_transcriptCBN15275.1
Other_sequenceOden_isotig07562
Oden_isotig07561
AYC01859_1
PPC04777_1
FC815104.1
ES570909.1
ES564516.1
GE626280.1
CSC00542_1
FC818521.1
MH00928
EW743593.1
DN557622.1
PT01375
HG02767
LSC00741_1
EW744546.1
FC809766.1
FC815681.1
ACC10877_1
Acan_isotig06168
HG03549
Oden_isotig07563
MHC02774_1
FC821112.1
Name_isotig01453
AE03200
Dviv_isotig24570
EX560470.1
FC810293.1
FD514549.1
GO252527.1
EX543274.1
SS01109
AE02667
Acan_isotig06167
EX547237.1
Tcol_isotig11532
JI165037.1
HGC00694_1
FD515573.1
ES569067.1
ES273586.1
FC819753.1
BXC00387_1
HSC00711_1
FG582472.1
Oden_isotig07564
CR02599
PTC00837_1
CRC03034_1
JO470086.1
TSC06566_1
HS01432
SSC03866_1
HG07618
SR00901
BUC01551_1
MethodGene