WormBase Tree Display for Gene: WBGene00139373

WBGene00139373 SMap: S_parent: Sequence: Cbre_Contig69
  Identity: Version: 2
    Name: CGC_name: Cbn-ttc-4 From_analysis: Inferred_from_orthology
      Sequence_name: CBN00648
      Molecular_name: CBN00648
        CBN00648.1
        CN08303
      Public_name: Cbn-ttc-4
    Species: Caenorhabditis brenneri
    History: Version_change: 1 01 Oct 2008 13:29:50 WBPerson4055 Event: Imported: from NGASP
        2 20 Mar 2018 10:26:11 WBPerson4025 Name_change: CGC_name: Cbn-ttc-4
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ttc
    RNASeq_FPKM: WBls:0000002 (11)
      WBls:0000004 14.9635 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
        7.48175 From_analysis: RNASeq.brenneri.WBls:0000004.control_mean
            RNASeq.brenneri.WBls:0000004.control_median
      WBls:0000024 12.5189 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
        12.7161 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
        13.0454 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
        29.9839 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
        30.3307 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
      WBls:0000038 17.5495 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
        19.0651 From_analysis: RNASeq.brenneri.WBls:0000038.control_mean
            RNASeq.brenneri.WBls:0000038.control_median
        20.5807 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
      WBls:0000041 (15)
      WBls:0000101 7.84404 From_analysis: RNASeq.brenneri.total_over_all_stages.control_median
        9.64299 From_analysis: RNASeq.brenneri.total_over_all_stages.control_mean
    Ortholog: WBGene00015916 Caenorhabditis elegans From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00025500 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00057325 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00137549 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      CBOVI.g12578 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g2462 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g5459 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g1548 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g12292 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g11851 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g11300 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g21453 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g9195 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g7101 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-C17G10.2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g11365 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00331.g9555 Caenorhabditis sinica From_analysis: WormBase-Compara
      GCK72_006075 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g02594 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g6488 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20110710 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00222534 Brugia malayi From_analysis: WormBase-Compara
      chrII_pilon.g4553 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00248123 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00273592 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00262260 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00290896 Trichuris muris From_analysis: WormBase-Compara
    Paralog: WBGene00153413 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00139131 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00153346 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00154000 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00161244 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00164684 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00191386 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00192704 Caenorhabditis brenneri From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Tetratricopeptide repeat and Tetratricopeptide-like helical domain superfamily. Is an ortholog of C. elegans ttc-4. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBN00648
    Corresponding_transcript: CBN00648.1
    Other_sequence (20)
  Experimental_info: Microarray_results: GPL14142_CBN00648_62-121_0.857_58_A
      GPL14142_CBN00648_1108-1167_0.948_1_C
  Method: Gene