WormBase Tree Display for Gene: WBGene00021236
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WBGene00021236 | SMap | S_parent | Sequence | Y19D10B | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | pud-1.2 | Person_evidence | WBPerson143 | |||
Sequence_name | Y19D10B.7 | ||||||
Molecular_name | Y19D10B.7 | ||||||
Y19D10B.7.1 | |||||||
CE25224 | |||||||
Other_name | Y19D10B.a | Curator_confirmed | WBPerson1983 | ||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||
CELE_Y19D10B.7 | Accession_evidence | NDB | BX284605 | ||||
Public_name | pud-1.2 | ||||||
DB_info | Database | AceView | gene | 5C800 | |||
WormFlux | gene | WBGene00021236 | |||||
NDB | locus_tag | CELE_Y19D10B.7 | |||||
NCBI | gene | 178709 | |||||
RefSeq | protein | NM_071236.7 | |||||
TREEFAM | TREEFAM_ID | TF319694 | |||||
TrEMBL | UniProtAcc | G5EET8 | |||||
UniProt_GCRP | UniProtAcc | G5EET8 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | pud | ||||||
Allele (20) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (14) | |||||||
Paralog | WBGene00017490 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WBGene00017498 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WBGene00017499 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WormBase-Compara | |||||||
WBGene00017500 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WBGene00017501 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WBGene00044489 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WBGene00044490 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Structured_description | Concise_description | PUD-1.2, along with PUD-1.1, encodes a protein (CE25224) of unknown function; the PUD-1.2/PUD-1.1 proteins are present at significantly higher levels in daf-2 mutant vs. wild-type adults during a temperature shift from 15 to 25 degrees C; pud-1.2(RNAi) animals have no obvious mutant phenotype (i. e., they have no obvious defect in fertility or germline maintenance); the PUD-1.2/PUD-1.1 proteins belong to a nematode-specific family including the paralogs PUD-2.1, PUD-2.2, PUD-3, and PUD-4. | Paper_evidence | WBPaper00030894 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 12 Jun 2015 00:00:00 | ||||||
Automated_description | Expressed in hypodermis and intestine. Is predicted to encode a protein with the following domains: Up-Regulated in long-lived daf-2 and Up-regulated in Daf-2. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y19D10B.7 | |||||
Corresponding_transcript | Y19D10B.7.1 | ||||||
Other_sequence | CBC06145_1 | ||||||
Associated_feature | WBsf233409 | ||||||
Experimental_info | RNAi_result | WBRNAi00044733 | Inferred_automatically | RNAi_primary | |||
WBRNAi00036705 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00044732 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern (3) | |||||||
Drives_construct | WBCnstr00017876 | ||||||
WBCnstr00017880 | |||||||
WBCnstr00017882 | |||||||
WBCnstr00018112 | |||||||
WBCnstr00024611 | |||||||
Construct_product | WBCnstr00017876 | ||||||
WBCnstr00017878 | |||||||
WBCnstr00017880 | |||||||
WBCnstr00017882 | |||||||
WBCnstr00018112 | |||||||
WBCnstr00024611 | |||||||
Antibody | WBAntibody00001282 | ||||||
Microarray_results (18) | |||||||
Expression_cluster (276) | |||||||
Interaction (14) | |||||||
Map_info | Map | V | Position | -14.8764 | |||
Positive | Positive_clone | Y19D10B | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00024325 | ||||||
WBPaper00030894 | |||||||
WBPaper00037428 | |||||||
WBPaper00065331 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |