WormBase Tree Display for Gene: WBGene00017498
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| WBGene00017498 | SMap | S_parent | Sequence | F15E11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pud-4 | Person_evidence | WBPerson143 | |||||
| Sequence_name | F15E11.12 | ||||||||
| Molecular_name | F15E11.12a | ||||||||
| F15E11.12a.1 | |||||||||
| CE25859 | |||||||||
| F15E11.12b | |||||||||
| CE48210 | |||||||||
| F15E11.12b.1 | |||||||||
| Other_name | F15E11.g | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| F15E11.i | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_F15E11.12 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | pud-4 | ||||||||
| DB_info | Database | AceView | gene | 5C805 | |||||
| WormQTL | gene | WBGene00017498 | |||||||
| WormFlux | gene | WBGene00017498 | |||||||
| NDB | locus_tag | CELE_F15E11.12 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017498|UniProtKB=M1ZJ62 | |||||||
| family | PTHR31557 | ||||||||
| NCBI | gene | 178712 | |||||||
| RefSeq | protein | NM_001307816.3 | |||||||
| NM_001307817.4 | |||||||||
| TrEMBL | UniProtAcc | M1ZMJ3 | |||||||
| M1ZJ62 | |||||||||
| UniProt_GCRP | UniProtAcc | M1ZJ62 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 20 Dec 2012 13:04:39 | WBPerson2970 | Name_change | CGC_name | pud-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pud | ||||||||
| Allele (23) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (16) | |||||||||
| Paralog | WBGene00017490 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WBGene00017501 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00017500 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00044489 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00044490 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00017499 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00021236 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Structured_description | Automated_description | Expressed in hyp7 syncytium. Is predicted to encode a protein with the following domains: Up-Regulated in long-lived daf-2 and Up-regulated in Daf-2. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F15E11.12a | |||||||
| F15E11.12b | |||||||||
| Corresponding_CDS_history | F15E11.12:wp112 | ||||||||
| F15E11.12:wp237 | |||||||||
| Corresponding_transcript | F15E11.12a.1 | ||||||||
| F15E11.12b.1 | |||||||||
| Other_sequence | CBC06473_1 | ||||||||
| Associated_feature | WBsf999497 | ||||||||
| WBsf231503 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00092883 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00031006 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00097112 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013374 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00070124 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00097102 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044729 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11083 | ||||||||
| Expr1028595 | |||||||||
| Expr1148698 | |||||||||
| Expr2015182 | |||||||||
| Expr2033417 | |||||||||
| Drives_construct | WBCnstr00018114 | ||||||||
| WBCnstr00018115 | |||||||||
| WBCnstr00027254 | |||||||||
| Construct_product | WBCnstr00018115 | ||||||||
| WBCnstr00027254 | |||||||||
| Microarray_results | SMD_F15E11.12 | ||||||||
| 186519_at | |||||||||
| A_12_P111158 | |||||||||
| GPL13394_WBGene00017498 | |||||||||
| GPL13914_F15E11.12 | |||||||||
| GPL14144_F15E11.12_164-223_0.953_3_B | |||||||||
| GPL14144_F15E11.12_19-78_0.805_42_C | |||||||||
| GPL14144_F15E11.12_227-286_0.963_1_A | |||||||||
| GPL19516_CGZ0016501 | |||||||||
| GPL19516_CGZ0016502 | |||||||||
| GPL21109_F15E11.12a | |||||||||
| GPL3518_CE25859 | |||||||||
| GPL8304_CE_WBGene00017498_A | |||||||||
| GPL8304_CE_WBGene00017498_B | |||||||||
| GPL8673_F15E11_12P00065 | |||||||||
| GPL8673_F15E11_12P00088 | |||||||||
| GPL8673_F15E11_12P00204 | |||||||||
| GPL9450_F15E11.12 | |||||||||
| cea2.p.113212 | |||||||||
| Expression_cluster (432) | |||||||||
| Interaction (47) | |||||||||
| Map_info | Map | V | Position | -14.8734 | |||||
| Positive | Positive_clone | F15E11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029190 | ||||||||
| WBPaper00029226 | |||||||||
| WBPaper00042533 | |||||||||
| WBPaper00057516 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
