WormBase Tree Display for Gene: WBGene00017498
expand all nodes | collapse all nodes | view schema
WBGene00017498 | SMap | S_parent | Sequence | F15E11 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | pud-4 | Person_evidence | WBPerson143 | |||
Sequence_name | F15E11.12 | ||||||
Molecular_name | F15E11.12a | ||||||
F15E11.12a.1 | |||||||
CE25859 | |||||||
F15E11.12b | |||||||
CE48210 | |||||||
F15E11.12b.1 | |||||||
Other_name | F15E11.g | Curator_confirmed | WBPerson1983 | ||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||
F15E11.i | Curator_confirmed | WBPerson1983 | |||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||
CELE_F15E11.12 | Accession_evidence | NDB | BX284605 | ||||
Public_name | pud-4 | ||||||
DB_info | Database | AceView | gene | 5C805 | |||
WormQTL | gene | WBGene00017498 | |||||
WormFlux | gene | WBGene00017498 | |||||
NDB | locus_tag | CELE_F15E11.12 | |||||
Panther | gene | CAEEL|WormBase=WBGene00017498|UniProtKB=M1ZJ62 | |||||
family | PTHR31557 | ||||||
NCBI | gene | 178712 | |||||
RefSeq | protein | NM_001307816.3 | |||||
NM_001307817.4 | |||||||
TrEMBL | UniProtAcc | M1ZMJ3 | |||||
M1ZJ62 | |||||||
UniProt_GCRP | UniProtAcc | M1ZJ62 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | pud | ||||||
Allele (23) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (16) | |||||||
Paralog | WBGene00017490 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | |||||||
WBGene00017501 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00017500 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WBGene00044489 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00044490 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00017499 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WBGene00021236 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Structured_description | Automated_description | Expressed in hyp7 syncytium. Is predicted to encode a protein with the following domains: Up-Regulated in long-lived daf-2 and Up-regulated in Daf-2. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F15E11.12a | |||||
F15E11.12b | |||||||
Corresponding_CDS_history | F15E11.12:wp112 | ||||||
F15E11.12:wp237 | |||||||
Corresponding_transcript | F15E11.12a.1 | ||||||
F15E11.12b.1 | |||||||
Other_sequence | CBC06473_1 | ||||||
Associated_feature | WBsf999497 | ||||||
WBsf231503 | |||||||
Experimental_info | RNAi_result | WBRNAi00092883 | Inferred_automatically | RNAi_primary | |||
WBRNAi00031006 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00097112 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00013374 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00070124 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00097102 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00044729 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr11083 | ||||||
Expr1028595 | |||||||
Expr1148698 | |||||||
Expr2015182 | |||||||
Expr2033417 | |||||||
Drives_construct | WBCnstr00018114 | ||||||
WBCnstr00018115 | |||||||
WBCnstr00027254 | |||||||
Construct_product | WBCnstr00018115 | ||||||
WBCnstr00027254 | |||||||
Microarray_results | SMD_F15E11.12 | ||||||
186519_at | |||||||
A_12_P111158 | |||||||
GPL13394_WBGene00017498 | |||||||
GPL13914_F15E11.12 | |||||||
GPL14144_F15E11.12_164-223_0.953_3_B | |||||||
GPL14144_F15E11.12_19-78_0.805_42_C | |||||||
GPL14144_F15E11.12_227-286_0.963_1_A | |||||||
GPL19516_CGZ0016501 | |||||||
GPL19516_CGZ0016502 | |||||||
GPL21109_F15E11.12a | |||||||
GPL3518_CE25859 | |||||||
GPL8304_CE_WBGene00017498_A | |||||||
GPL8304_CE_WBGene00017498_B | |||||||
GPL8673_F15E11_12P00065 | |||||||
GPL8673_F15E11_12P00088 | |||||||
GPL8673_F15E11_12P00204 | |||||||
GPL9450_F15E11.12 | |||||||
cea2.p.113212 | |||||||
Expression_cluster (432) | |||||||
Interaction (47) | |||||||
Map_info | Map | V | Position | -14.8734 | |||
Positive | Positive_clone | F15E11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00029190 | ||||||
WBPaper00029226 | |||||||
WBPaper00042533 | |||||||
WBPaper00057516 | |||||||
WBPaper00065331 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |