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WormBase Tree Display for Gene: WBGene00016088

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Name Class

WBGene00016088SMapS_parentSequenceC25B8
IdentityVersion2
NameCGC_nameclec-266Person_evidenceWBPerson2531
Sequence_nameC25B8.4
Molecular_nameC25B8.4a
C25B8.4a.1
CE27087
C25B8.4b
CE34259
C25B8.4c
CE34260
C25B8.4b.1
C25B8.4c.1
Other_nameCELE_C25B8.4Accession_evidenceNDBBX284606
Public_nameclec-266
DB_infoDatabaseAceViewgeneXH236
WormQTLgeneWBGene00016088
WormFluxgeneWBGene00016088
NDBlocus_tagCELE_C25B8.4
PanthergeneCAEEL|WormBase=WBGene00016088|UniProtKB=H2KZ07
familyPTHR22802
NCBIgene180932
RefSeqproteinNM_001029256.4
NM_001392791.1
NM_001029257.5
TREEFAMTREEFAM_IDTF316271
TrEMBLUniProtAccH2KZ06
H2KZ07
Q7Z121
UniProt_GCRPUniProtAccH2KZ07
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:57WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
209 Oct 2007 15:40:28WBPerson2970Name_changeCGC_nameclec-266
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classclec
Allele (72)
StrainWBStrain00036366
WBStrain00051150
RNASeq_FPKM (74)
GO_annotation00022014
00022015
00022016
OrthologWBGene00051465Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00032116Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00162973Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00218799Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g3535Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g8068Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g6801Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g17463Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g2714Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g26465Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g296Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g18987Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g23319Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g15688Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-clec-266Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp5_scaffold_00135.g5302Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_00322Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_024617Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g07306Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_X0191710Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g19272Caenorhabditis elegansFrom_analysisWormBase-Compara
FB:FBgn0038315Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Panther
ZFIN:ZDB-GENE-050311-4Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
ZFIN:ZDB-GENE-060526-151Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
ZFIN:ZDB-GENE-060526-152Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
ZFIN:ZDB-GENE-081105-120Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
MGI:1861232Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
MGI:3036291Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
RGD:2160Rattus norvegicusFrom_analysisEnsEMBL-Compara
SonicParanoid
RGD:61318Rattus norvegicusFrom_analysisHieranoid
SonicParanoid
RGD:2161Rattus norvegicusFrom_analysisEnsEMBL-Compara
SonicParanoid
RGD:2976Rattus norvegicusFrom_analysisInparanoid
SonicParanoid
RGD:2977Rattus norvegicusFrom_analysisInparanoid
SonicParanoid
RGD:621158Rattus norvegicusFrom_analysisEnsEMBL-Compara
SonicParanoid
RGD:1308239Rattus norvegicusFrom_analysisEnsEMBL-Compara
SonicParanoid
RGD:1565373Rattus norvegicusFrom_analysisHieranoid
SonicParanoid
RGD:1359163Rattus norvegicusFrom_analysisEnsEMBL-Compara
SonicParanoid
RGD:1359109Rattus norvegicusFrom_analysisEnsEMBL-Compara
SonicParanoid
RGD:1359528Rattus norvegicusFrom_analysisEnsEMBL-Compara
SonicParanoid
RGD:1303339Rattus norvegicusFrom_analysisEnsEMBL-Compara
SonicParanoid
RGD:1359354Rattus norvegicusFrom_analysisEnsEMBL-Compara
SonicParanoid
RGD:1359298Rattus norvegicusFrom_analysisEnsEMBL-Compara
SonicParanoid
RGD:1359662Rattus norvegicusFrom_analysisEnsEMBL-Compara
SonicParanoid
RGD:1359505Rattus norvegicusFrom_analysisEnsEMBL-Compara
SonicParanoid
RGD:1560637Rattus norvegicusFrom_analysisInparanoid
SonicParanoid
ParalogWBGene00007152Caenorhabditis elegansFrom_analysisPanther
WBGene00007709Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00007729Caenorhabditis elegansFrom_analysisPanther
WBGene00007820Caenorhabditis elegansFrom_analysisPanther
WBGene00007822Caenorhabditis elegansFrom_analysisPanther
WBGene00008203Caenorhabditis elegansFrom_analysisPanther
WBGene00009156Caenorhabditis elegansFrom_analysisTreeFam
WBGene00011668Caenorhabditis elegansFrom_analysisPanther
WBGene00012621Caenorhabditis elegansFrom_analysisPanther
WBGene00014117Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00016912Caenorhabditis elegansFrom_analysisPanther
WBGene00019606Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017322Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00023502Caenorhabditis elegansFrom_analysisPanther
WBGene00019738Caenorhabditis elegansFrom_analysisPanther
WBGene00044790Caenorhabditis elegansFrom_analysisPanther
WBGene00019328Caenorhabditis elegansFrom_analysisPanther
WBGene00021603Caenorhabditis elegansFrom_analysisPanther
WBGene00021602Caenorhabditis elegansFrom_analysisPanther
WBGene00017772Caenorhabditis elegansFrom_analysisPanther
WBGene00255469Caenorhabditis elegansFrom_analysisPanther
WBGene00019914Caenorhabditis elegansFrom_analysisPanther
WBGene00017199Caenorhabditis elegansFrom_analysisPanther
WBGene00018692Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable carbohydrate binding activity. Predicted to be located in external side of plasma membrane. Expressed in intestinal cell.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC25B8.4a
C25B8.4b
C25B8.4c
Corresponding_transcriptC25B8.4a.1
C25B8.4b.1
C25B8.4c.1
Other_sequenceGE625313.1
CRC04609_1
Oden_isotig22084
CR07117
GE626085.1
CRC05725_1
GE626570.1
GE625727.1
GE625068.1
Associated_feature (20)
Experimental_infoRNAi_resultWBRNAi00041161Inferred_automaticallyRNAi_primary
WBRNAi00001487Inferred_automaticallyRNAi_primary
WBRNAi00011147Inferred_automaticallyRNAi_primary
WBRNAi00029183Inferred_automaticallyRNAi_primary
WBRNAi00041162Inferred_automaticallyRNAi_primary
WBRNAi00041164Inferred_automaticallyRNAi_primary
Expr_patternExpr12639
Expr1019626
Expr1036874
Expr1145193
Expr2010158
Expr2028401
Drives_constructWBCnstr00022346
WBCnstr00028333
Construct_productWBCnstr00022346
WBCnstr00028333
Microarray_results (32)
Expression_cluster (351)
Interaction (169)
Map_infoMapXPosition-2.71813Error0.008827
PositivePositive_cloneC25B8Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00031686
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene