WormBase Tree Display for Gene: WBGene00019606
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| WBGene00019606 | SMap | S_parent | Sequence | K10B2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clec-88 | |||||||
| Sequence_name | K10B2.3 | ||||||||
| Molecular_name | K10B2.3a | ||||||||
| K10B2.3a.1 | |||||||||
| CE33419 | |||||||||
| K10B2.3b | |||||||||
| CE33420 | |||||||||
| K10B2.3b.1 | |||||||||
| Other_name | cpg-6 | Paper_evidence | WBPaper00027679 | ||||||
| CELE_K10B2.3 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | clec-88 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 15 Jun 2006 11:58:01 | WBPerson2970 | Name_change | CGC_name | clec-88 | ||||
| Other_name | cpg-6 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele (24) | |||||||||
| Strain | WBStrain00050927 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00083496 | ||||||||
| 00083497 | |||||||||
| 00083498 | |||||||||
| 00083499 | |||||||||
| 00083500 | |||||||||
| 00083501 | |||||||||
| Contained_in_operon | CEOP2248 | ||||||||
| Ortholog (43) | |||||||||
| Paralog (23) | |||||||||
| Structured_description | Concise_description | clec-88 encodes, by alternative splicing, two isoforms of a putativelysecreted C-type lectin paralogous to CLEC-87, C25B8.4, F26D10.12, andZK858.3; CLEC-88 has a single chondroitin attachment site verified bymass spectrometry; CLEC-88 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00027679 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 02 May 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable carbohydrate binding activity. Predicted to be located in external side of plasma membrane. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Is an ortholog of human KLRF2 (killer cell lectin like receptor F2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:684 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13342) | ||||
| Molecular_info | Corresponding_CDS | K10B2.3a | |||||||
| K10B2.3b | |||||||||
| Corresponding_CDS_history | K10B2.3:wp94 | ||||||||
| Corresponding_transcript | K10B2.3a.1 | ||||||||
| K10B2.3b.1 | |||||||||
| Other_sequence | Tcir_isotig17094 | ||||||||
| FK802813.1 | |||||||||
| Hbac_isotig02808 | |||||||||
| Associated_feature | WBsf644275 | ||||||||
| WBsf976444 | |||||||||
| WBsf976445 | |||||||||
| WBsf976446 | |||||||||
| WBsf221425 | |||||||||
| WBsf221426 | |||||||||
| WBsf221427 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00050473 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00034227 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00050472 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022399 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062314 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1022185 | ||||||||
| Expr1038465 | |||||||||
| Expr1154183 | |||||||||
| Expr2010219 | |||||||||
| Expr2028460 | |||||||||
| Drives_construct | WBCnstr00025734 | ||||||||
| Construct_product | WBCnstr00025734 | ||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (220) | |||||||||
| Interaction (280) | |||||||||
| Map_info | Map | II | Position | -0.378744 | Error | 0.000717 | |||
| Positive | Positive_clone | K10B2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027679 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065859 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
