WormBase Tree Display for Gene: WBGene00015062
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WBGene00015062 | SMap | S_parent | Sequence | B0228 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | trx-1 | Person_evidence | WBPerson3046 | |||||
Sequence_name | B0228.5 | ||||||||
Molecular_name | B0228.5a | ||||||||
B0228.5a.1 | |||||||||
CE01745 | |||||||||
B0228.5b | |||||||||
CE34629 | |||||||||
B0228.5b.1 | |||||||||
Other_name | B0228.c | Curator_confirmed | WBPerson1983 | ||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_B0228.5 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | trx-1 | ||||||||
DB_info | Database | AceView | gene | 2I42 | |||||
WormQTL | gene | WBGene00015062 | |||||||
WormFlux | gene | WBGene00015062 | |||||||
NDB | locus_tag | CELE_B0228.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00015062|UniProtKB=Q09433 | |||||||
family | PTHR10438 | ||||||||
NCBI | gene | 181863 | |||||||
RefSeq | protein | NM_001026715.7 | |||||||
NM_001026714.4 | |||||||||
SwissProt | UniProtAcc | Q09433 | |||||||
TREEFAM | TREEFAM_ID | TF318932 | |||||||
UniProt_GCRP | UniProtAcc | Q09433 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 17 Mar 2006 11:50:30 | WBPerson2970 | Name_change | CGC_name | trx-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | trx | ||||||||
Allele (17) | |||||||||
Strain | WBStrain00001990 | ||||||||
WBStrain00023529 | |||||||||
WBStrain00032031 | |||||||||
WBStrain00040309 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00053793 | ||||||||
00053794 | |||||||||
00053795 | |||||||||
00053796 | |||||||||
00053797 | |||||||||
00053798 | |||||||||
00053799 | |||||||||
00053800 | |||||||||
00121076 | |||||||||
Ortholog (30) | |||||||||
Paralog | WBGene00021548 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
WormBase-Compara | |||||||||
WBGene00007099 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00020917 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00021826 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00021933 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | trx-1 encodes a thioredoxin, a small redox protein that functions as a protein-disulfide reductase; loss of trx-1 activity via a deletion mutation and RNAi indicates that trx-1 is required for normal adult lifespan; in vitro, TRX-1 is capable of reducing protein disulfide bonds in the presence of a mammalian thioredoxin reductase; a TRX-1::GFP fusion protein is expressed in the ASJL/R amphid chemosensory neurons in males and hermaphrodites beginning just prior to hatching and continuing through larval and adult stages, including the alternative dauer larval stage; expression is also variably detected in posterior intestinal cells in larvae and adults, but not in dauers; subcellularly, the TRX-1::GFP fusion protein is detected in the nucleus, cytoplasm, cilia, dendrites, and axons. | Paper_evidence | WBPaper00026991 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson567 | |||||||||
Date_last_updated | 11 Dec 2006 00:00:00 | ||||||||
Automated_description | Enables protein-disulfide reductase activity. Involved in determination of adult lifespan. Located in several cellular components, including neuronal cell body; nucleus; and plasma membrane bounded cell projection. Expressed in ASJL; ASJR; head neurons; and in male. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | B0228.5a | |||||||
B0228.5b | |||||||||
Corresponding_transcript | B0228.5a.1 | ||||||||
B0228.5b.1 | |||||||||
Other_sequence | HG10738 | ||||||||
CRC03474_1 | |||||||||
CR05982 | |||||||||
HG05543 | |||||||||
HG10090 | |||||||||
Dviv_isotig19334 | |||||||||
Dviv_isotig19335 | |||||||||
Associated_feature | WBsf650265 | ||||||||
WBsf977973 | |||||||||
WBsf977975 | |||||||||
WBsf977977 | |||||||||
WBsf977978 | |||||||||
WBsf988550 | |||||||||
WBsf1012594 | |||||||||
WBsf223386 | |||||||||
WBsf223387 | |||||||||
Experimental_info | RNAi_result | WBRNAi00009608 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00065061 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00108374 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00065059 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00065060 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00028012 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00038765 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (14) | |||||||||
Drives_construct (36) | |||||||||
Construct_product (21) | |||||||||
Antibody | WBAntibody00001036 | ||||||||
WBAntibody00001044 | |||||||||
WBAntibody00001045 | |||||||||
WBAntibody00001046 | |||||||||
Microarray_results (25) | |||||||||
Expression_cluster (66) | |||||||||
Interaction (61) | |||||||||
WBProcess | WBbiopr:00000001 | ||||||||
Map_info | Map | II | Position | 0.560059 | Error | 0.000537 | |||
Positive | Positive_clone | B0228 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (35) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |