WormBase Tree Display for CDS: B0228.5b
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| B0228.5b | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | B0228 | |||
| Structure | Source_exons | 1 | 42 | |||
| 96 | 257 | |||||
| 529 | 600 | |||||
| 655 | 723 | |||||
| DB_info | Database | SwissProt | UniProtAcc | Q09433 | ||
| UniProtIsoformAcc | Q09433-2 | |||||
| UniProt | UniProtAcc | Q09433 | ||||
| UniProt_GCRP | UniProtAcc | Q09433 | ||||
| AlphaFold | entry | Q09433 | ||||
| NCBI_protein | GI_number | GI:351065477 | ||||
| Protein_id | CHROMOSOME_II | CCD61449 | 1 | |||
| DB_remark | TRX-1 protein; contains similarity to Pfam domain PF00085 (Thioredoxin); contains similarity to Interpro domains IPR036249 (Thioredoxin-like superfamily), IPR013766 (Thioredoxin domain), IPR005746 (Thioredoxin) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Accession_evidence | EMBL | CB389161 | |||
| Visible | Gene | WBGene00015062 | ||||
| Corresponding_transcript | B0228.5b.1 | |||||
| Corresponding_protein | CE34629 | |||||
| Corresponding_PCR_product | cenix:207-f10 | |||||
| mv_B0228.5 | ||||||
| mv_B0228.c | ||||||
| sjj_B0228.5 | ||||||
| Corresponding_oligo_set (20) | ||||||
| Matching_cDNA | L3_Nanopore_Roach_36532 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Li_53229 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_218749 | Inferred_automatically | transcript_builder.pl | ||||
| DQ241300 | Inferred_automatically | transcript_builder.pl | ||||
| OSTF113E11_1 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR113E11_1 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_250235 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00009608 | |||||
| WBRNAi00065061 | ||||||
| WBRNAi00108374 | ||||||
| WBRNAi00065059 | ||||||
| WBRNAi00065060 | ||||||
| WBRNAi00028012 | ||||||
| WBRNAi00038765 | ||||||
| Microarray_results (21) | ||||||
| Brief_identification | Thioredoxin-1 | Accession_evidence | UniProt | SP:Q09433 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
