WormBase Tree Display for Gene: WBGene00015062
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| WBGene00015062 | SMap | S_parent | Sequence | B0228 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | trx-1 | Person_evidence | WBPerson3046 | |||||
| Sequence_name | B0228.5 | ||||||||
| Molecular_name | B0228.5a | ||||||||
| B0228.5a.1 | |||||||||
| CE01745 | |||||||||
| B0228.5b | |||||||||
| CE34629 | |||||||||
| B0228.5b.1 | |||||||||
| Other_name | B0228.c | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_B0228.5 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | trx-1 | ||||||||
| DB_info | Database | AceView | gene | 2I42 | |||||
| WormQTL | gene | WBGene00015062 | |||||||
| WormFlux | gene | WBGene00015062 | |||||||
| NDB | locus_tag | CELE_B0228.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00015062|UniProtKB=Q09433 | |||||||
| family | PTHR10438 | ||||||||
| NCBI | gene | 181863 | |||||||
| RefSeq | protein | NM_001026715.7 | |||||||
| NM_001026714.4 | |||||||||
| SwissProt | UniProtAcc | Q09433 | |||||||
| TREEFAM | TREEFAM_ID | TF318932 | |||||||
| UniProt_GCRP | UniProtAcc | Q09433 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 17 Mar 2006 11:50:30 | WBPerson2970 | Name_change | CGC_name | trx-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | trx | ||||||||
| Allele (17) | |||||||||
| Strain | WBStrain00001990 | ||||||||
| WBStrain00023529 | |||||||||
| WBStrain00032031 | |||||||||
| WBStrain00040309 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00053793 | ||||||||
| 00053794 | |||||||||
| 00053795 | |||||||||
| 00053796 | |||||||||
| 00053797 | |||||||||
| 00053798 | |||||||||
| 00053799 | |||||||||
| 00053800 | |||||||||
| 00121076 | |||||||||
| Ortholog (30) | |||||||||
| Paralog | WBGene00021548 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WormBase-Compara | |||||||||
| WBGene00007099 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020917 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021826 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021933 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | trx-1 encodes a thioredoxin, a small redox protein that functions as a protein-disulfide reductase; loss of trx-1 activity via a deletion mutation and RNAi indicates that trx-1 is required for normal adult lifespan; in vitro, TRX-1 is capable of reducing protein disulfide bonds in the presence of a mammalian thioredoxin reductase; a TRX-1::GFP fusion protein is expressed in the ASJL/R amphid chemosensory neurons in males and hermaphrodites beginning just prior to hatching and continuing through larval and adult stages, including the alternative dauer larval stage; expression is also variably detected in posterior intestinal cells in larvae and adults, but not in dauers; subcellularly, the TRX-1::GFP fusion protein is detected in the nucleus, cytoplasm, cilia, dendrites, and axons. | Paper_evidence | WBPaper00026991 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 11 Dec 2006 00:00:00 | ||||||||
| Automated_description | Enables protein-disulfide reductase activity. Involved in determination of adult lifespan. Located in several cellular components, including neuronal cell body; nucleus; and plasma membrane bounded cell projection. Expressed in ASJL; ASJR; head neurons; and in male. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0228.5a | |||||||
| B0228.5b | |||||||||
| Corresponding_transcript | B0228.5a.1 | ||||||||
| B0228.5b.1 | |||||||||
| Other_sequence | HG10738 | ||||||||
| CRC03474_1 | |||||||||
| CR05982 | |||||||||
| HG05543 | |||||||||
| HG10090 | |||||||||
| Dviv_isotig19334 | |||||||||
| Dviv_isotig19335 | |||||||||
| Associated_feature | WBsf650265 | ||||||||
| WBsf977973 | |||||||||
| WBsf977975 | |||||||||
| WBsf977977 | |||||||||
| WBsf977978 | |||||||||
| WBsf988550 | |||||||||
| WBsf1012594 | |||||||||
| WBsf223386 | |||||||||
| WBsf223387 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00009608 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00065061 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00108374 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065059 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065060 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028012 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038765 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (14) | |||||||||
| Drives_construct | WBCnstr00002774 | ||||||||
| WBCnstr00004411 | |||||||||
| WBCnstr00006580 | |||||||||
| WBCnstr00006582 | |||||||||
| WBCnstr00006586 | |||||||||
| WBCnstr00006925 | |||||||||
| WBCnstr00006927 | |||||||||
| WBCnstr00007899 | |||||||||
| WBCnstr00007900 | |||||||||
| WBCnstr00007902 | |||||||||
| WBCnstr00007905 | |||||||||
| WBCnstr00007906 | |||||||||
| WBCnstr00007939 | |||||||||
| WBCnstr00008292 | |||||||||
| WBCnstr00008446 | |||||||||
| WBCnstr00008447 | |||||||||
| WBCnstr00008450 | |||||||||
| WBCnstr00008451 | |||||||||
| WBCnstr00008452 | |||||||||
| WBCnstr00008643 | |||||||||
| WBCnstr00008645 | |||||||||
| WBCnstr00011666 | |||||||||
| WBCnstr00011802 | |||||||||
| WBCnstr00019708 | |||||||||
| WBCnstr00019709 | |||||||||
| WBCnstr00020260 | |||||||||
| WBCnstr00020261 | |||||||||
| WBCnstr00020263 | |||||||||
| WBCnstr00020264 | |||||||||
| WBCnstr00020265 | |||||||||
| WBCnstr00020267 | |||||||||
| WBCnstr00020562 | |||||||||
| WBCnstr00022799 | |||||||||
| WBCnstr00029117 | |||||||||
| WBCnstr00042550 | |||||||||
| WBCnstr00042748 | |||||||||
| Construct_product (21) | |||||||||
| Antibody | WBAntibody00001036 | ||||||||
| WBAntibody00001044 | |||||||||
| WBAntibody00001045 | |||||||||
| WBAntibody00001046 | |||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (66) | |||||||||
| Interaction (61) | |||||||||
| WBProcess | WBbiopr:00000001 | ||||||||
| Map_info | Map | II | Position | 0.560059 | Error | 0.000537 | |||
| Positive | Positive_clone | B0228 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (35) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
