WormBase Tree Display for Gene: WBGene00014109

WBGene00014109 SMap: S_parent: Sequence: ZK856
  Identity: Version: 2
    Name: CGC_name: chpf-1 Person_evidence: WBPerson2233
      Sequence_name: ZK856.8
      Molecular_name: ZK856.8
        ZK856.8.1
        CE06665
      Other_name: CELE_ZK856.8 Accession_evidence: NDB BX284605
      Public_name: chpf-1
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 14 Apr 2015 09:52:28 WBPerson2970 Name_change: CGC_name: chpf-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: chpf
    Allele (20)
    Strain: WBStrain00003461
    RNASeq_FPKM (74)
    GO_annotation (12)
    Contained_in_operon: CEOP5248
    Ortholog (40)
    Paralog: WBGene00003941 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00019108 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00000554 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00009260 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00020192 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable calcium ion binding activity. Predicted to be located in plasma membrane. Expressed in head; intestine; tail; and in male. Human ortholog(s) of this gene implicated in spastic ataxia. Is an ortholog of human CHP1 (calcineurin like EF-hand protein 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0050952 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:17433)
  Molecular_info: Corresponding_CDS: ZK856.8
    Corresponding_transcript: ZK856.8.1
    Other_sequence (109)
    Associated_feature: WBsf652968
      WBsf652969
      WBsf234342
      WBsf234343
  Experimental_info: RNAi_result: WBRNAi00033583 Inferred_automatically: RNAi_primary
      WBRNAi00022203 Inferred_automatically: RNAi_primary
      WBRNAi00080519 Inferred_automatically: RNAi_primary
      WBRNAi00027568 Inferred_automatically: RNAi_primary
      WBRNAi00027110 Inferred_automatically: RNAi_primary
      WBRNAi00059779 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr7265
      Expr12596
      Expr12597
      Expr1012295
      Expr1036319
      Expr1163208
      Expr2009997
      Expr2028238
    Drives_construct: WBCnstr00003922
      WBCnstr00022362
      WBCnstr00022363
      WBCnstr00029301
    Construct_product: WBCnstr00029301
    Microarray_results (23)
    Expression_cluster: WBPaper00032528:L3_enriched
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:hypodermis_larva_enriched
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00040965:lipid-droplet_associated_protein
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045140:aging_dynamic_regulation
      WBPaper00045316:prg-1_downregulated_L1
      WBPaper00045316:prg-1_downregulated_L2
      WBPaper00045316:prg-1_downregulated_L3
      WBPaper00045521:Gender_Neutral
      WBPaper00045774:clk-1_downregulated
      WBPaper00045974:NSM_enriched_totalRNA_RNAseq
      WBPaper00048988:neuron_expressed
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_24-cell-embryo
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00051039:germline_enriched
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00055103:thoc-5(wy822)_downregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00060703:nas-38(ok3407)_upregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061527:cdc-42_17192-rab-5_18073
      WBPaper00062156:jmjd-5(zr1234)_upregulated_germline
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064130:Beta-Amyloid_upregulated_protein
      WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065841:11_1
      WBPaper00065841:11_3
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066085:sin-3(syb2172)_downregulated
      cgc4489_group_21
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00031003:0hr_muscle_enriched
      WBPaper00031003:24hr_muscle_enriched
      WBPaper00031003:total_muscle_enriched
      WBPaper00035905:FBF-1_Associated
      WBPaper00036123:Fluoranthene_regulated
      WBPaper00036286:Pattern_F
      WBPaper00036375:depleted_in_PVD_OLL
      WBPaper00040210:Chlorpyrifos_16C_regulated
      WBPaper00040858:eQTL_regulated_old
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00048989:eat-2(ad465)_downregulated_in-DMSO
      WBPaper00048989:N2_rapamycin_upregulated
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_ET
      [cgc5767]:expression_class_ET_max(66_min)
      [cgc5767]:expression_class_E_pi(41_min)
      [cgc5767]:expression_class_E_pi(53_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc5767]:expression_class_MET
    Interaction (28)
  Map_info: Positive: Positive_clone: ZK856 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 2.32882
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00061547
  Method: Gene