WormBase Tree Display for Gene: WBGene00009260
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| WBGene00009260 | SMap | S_parent | Sequence | F30A10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | calm-1 | Person_evidence | WBPerson1687 | |||||
| Sequence_name | F30A10.1 | ||||||||
| Molecular_name | F30A10.1 | ||||||||
| F30A10.1.1 | |||||||||
| CE44485 | |||||||||
| Other_name | CELE_F30A10.1 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | calm-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 29 Mar 2011 11:42:34 | WBPerson2970 | Name_change | CGC_name | calm-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | calm | ||||||||
| Allele (24) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00086323 | ||||||||
| 00086324 | |||||||||
| 00086325 | |||||||||
| 00117004 | |||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00000554 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00003941 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00014109 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019108 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020192 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable calcium ion binding activity and magnesium ion binding activity. Predicted to be involved in calcium ion homeostasis. Expressed in cholinergic neurons and ventral nerve cord. Human ortholog(s) of this gene implicated in Usher syndrome type 1J and autosomal recessive nonsyndromic deafness 48. Is an ortholog of human CIB2 (calcium and integrin binding family member 2) and CIB3 (calcium and integrin binding family member 3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110505 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:24579) | ||||
| DOID:0110836 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:24579) | ||||||
| Molecular_info | Corresponding_CDS | F30A10.1 | |||||||
| Corresponding_CDS_history | F30A10.1:wp211 | ||||||||
| Corresponding_transcript | F30A10.1.1 | ||||||||
| Other_sequence (27) | |||||||||
| Associated_feature | WBsf649473 | ||||||||
| WBsf664755 | |||||||||
| WBsf664756 | |||||||||
| WBsf664757 | |||||||||
| WBsf984705 | |||||||||
| WBsf1010380 | |||||||||
| WBsf220085 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00045949 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00025325 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116936 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00025323 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00025324 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003530 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr10611 | ||||||||
| Expr1014864 | |||||||||
| Expr1034039 | |||||||||
| Expr1149846 | |||||||||
| Expr2009709 | |||||||||
| Expr2027948 | |||||||||
| Drives_construct | WBCnstr00017105 | ||||||||
| WBCnstr00032334 | |||||||||
| Construct_product | WBCnstr00017102 | ||||||||
| WBCnstr00032334 | |||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (107) | |||||||||
| Interaction (29) | |||||||||
| Map_info | Map | I | Position | 3.76906 | Error | 0.000484 | |||
| Positive | Positive_clone | F30A10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00034089 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00039244 | |||||||||
| WBPaper00041824 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| WBPaper00064595 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
