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WormBase Tree Display for Gene: WBGene00012594

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Name Class

WBGene00012594SMapS_parentSequenceY38E10A
IdentityVersion2
NameCGC_namenspe-5Person_evidenceWBPerson1983
Sequence_nameY38E10A.16
Molecular_nameY38E10A.16
Y38E10A.16.1
CE21596
Other_nameCELE_Y38E10A.16Accession_evidenceNDBBX284602
Public_namenspe-5
DB_infoDatabaseAceViewgene2M919
WormQTLgeneWBGene00012594
WormFluxgeneWBGene00012594
NDBlocus_tagCELE_Y38E10A.16
PanthergeneCAEEL|WormBase=WBGene00012594|UniProtKB=Q9NAJ5
familyPTHR34602
NCBIgene189662
RefSeqproteinNM_064298.3
TREEFAMTREEFAM_IDTF319947
TrEMBLUniProtAccQ9NAJ5
UniProt_GCRPUniProtAccQ9NAJ5
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:54WBPerson1971EventImportedInitial conversion from CDS class of WS125
219 Nov 2008 14:26:07WBPerson2970Name_changeCGC_namenspe-5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnspe
Allele (21)
RNASeq_FPKM (74)
Ortholog (41)
ParalogWBGene00012587Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00012589Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00012590Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00012591Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00012593Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00012603Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00012604Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00175028Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in hypodermis based on tiling array studies. Is affected by several genes including daf-2; sir-2.1; and dpy-7 based on microarray; RNA-seq; and tiling array studies. Is affected by twenty chemicals including hydrogen sulfide; methylmercuric chloride; and multi-walled carbon nanotube based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Protein of unknown function (DUF1412) and Protein of unknown function DUF1412.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY38E10A.16
Corresponding_transcriptY38E10A.16.1
Other_sequenceCJC04797_1
CJC02323_1
CJC14440_1
CBC10913_1
Associated_featureWBsf644762
WBsf644763
WBsf222280
Experimental_infoRNAi_resultWBRNAi00022477Inferred_automaticallyRNAi_primary
WBRNAi00056015Inferred_automaticallyRNAi_primary
Expr_pattern (4)
Drives_constructWBCnstr00029892
Construct_productWBCnstr00029892
Microarray_results (15)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:hypodermis_larva_enriched
WBPaper00037950:hypodermis_larva_SelectivelyEnriched
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_downregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_downregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
WBPaper00040285:H2S_1hr_upregulated
WBPaper00042194:nhr-114(RNAi)_downregulated
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00044316:CH3HgCl_7.5uM_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044857:BAR-1_downregulated
WBPaper00045314:S.aureus-induced_hlh-30(tm1978)
WBPaper00045314:S.aureus-induced_N2
WBPaper00046887:WNT-target
WBPaper00049377:MWCNT_upregulated
WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_adult_25C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00053295:lin-22(ot269)_upregulated
WBPaper00053302:alovudine_24h_regulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053402:cco-1(RNAi)_upregulated
WBPaper00053771:up_at_24h-NaCl
WBPaper00053771:up_at_dpy-7(e88)
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053888:drh-3(rrr2)_upregulated
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00055013:hmg-3(bar24)_upregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00055827:daf-2(e1370)_upregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00057041:spc-1(cas971)_upregulated
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00058725:sftb-1(cer39)_upregulated
WBPaper00058955:heatshock_upregulated_CE
WBPaper00059334:sacy-1(depletion)_regulated
WBPaper00059378:cec-4(ok3124);lmn-1(Y59C)_vs_lmn-1(Y59C)_downregulated
WBPaper00059566:wdr-23(mac32)_upregulated
WBPaper00059739:hira-1(gk835598)_upregulated_adult
WBPaper00059754:E.faecalis_OG1RF_upregulated
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060014:set-2(zr2012)_upregulated
WBPaper00060278:atp-2(RNAi)_upregulated
WBPaper00060445:ikb-1(nr2027)_downregulated_L4
WBPaper00060445:nfki-1(cer1)_downregulated_L4
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061527:T24C12.3-C01G10.9
WBPaper00061699:daf-18(ok480)_downregulated
WBPaper00061753:csr-1(tor159)_upregulated_25C
WBPaper00061952:daf-18(nr2037)_downregulated
WBPaper00061952:daf-18(yh1)_downregulated
WBPaper00061995:mter-4(syb3662syb3403)_downregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062345:bortezomib_4h_upregulated_N2
WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
WBPaper00062456:doxycycline_upregulated_N2_transcript
WBPaper00062590:Aging_downregulated_hypodermis
WBPaper00064005:starvation_downregulated_aptf-1(gk794)_mRNA
WBPaper00064005:starvation_downregulated_N2_mRNA
WBPaper00064403:Heat-killed-E.Coli_upregulated
WBPaper00064494:postdauer_downregulated_WholeAnimal
WBPaper00064505:tamoxifen_downregulated
WBPaper00065215:microgravity_downregulated_DESeq2
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066232:ash-2(RNAi)_downregulated_WT
WBPaper00066232:hsf-1(RNAi)_downregulated_ash-2
WBPaper00066232:hsf-1(RNAi)_downregulated_WT
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00031252:AIN-1_IP_enriched
WBPaper00032165:differentially_expressed_with_age_medoid_2
WBPaper00032948:FedUp
WBPaper00034661:AgNPs_upregulated
WBPaper00035084:embryo_enriched_AIN-2_IP
WBPaper00035084:L1_enriched_AIN-2_IP
WBPaper00035084:L2_enriched_AIN-2_IP
WBPaper00035084:L3_enriched_AIN-2_IP
WBPaper00035084:L4_enriched_AIN-2_IP
WBPaper00035560:ahr-1_downregulated
WBPaper00036123:Atrazine_regulated
WBPaper00036286:Pattern_I
WBPaper00037695:WC_5-day
WBPaper00038172:crh-1null_up_regulated
WBPaper00039851:Live_C_albicans_vs_HK_OP50
WBPaper00039866:ClassComp_daf-19_downregulated
WBPaper00040858:eQTL_regulated_developing
WBPaper00040858:eQTL_regulated_juvenile
WBPaper00040963:Q100_down
WBPaper00040963:Q200_down
WBPaper00041002:HF_3d_2.0mM_Down
WBPaper00041211:RPW-24_Up
WBPaper00042067:Cu2+_upregulated_WT
WBPaper00042274:tbx-2(bx59)_upregulated
WBPaper00047070:N2_UV_upregulated
WBPaper00053550:daf-19(m86)_downregulated_3-fold-embryo
WBPaper00056330:mrps-5(RNAi)_upregulated
WBPaper00057098:SiO2-nanoparticles_upregulated
Map_infoMapIIPosition10.57Error0.014339
PositivePositive_cloneY38E10AInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene