WormBase Tree Display for Gene: WBGene00012593
expand all nodes | collapse all nodes | view schema
WBGene00012593 | SMap | S_parent | Sequence | Y38E10A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | nspe-7 | Person_evidence | WBPerson1983 | |||||
Sequence_name | Y38E10A.15 | ||||||||
Molecular_name | Y38E10A.15 | ||||||||
Y38E10A.15.1 | |||||||||
CE21595 | |||||||||
Other_name | CELE_Y38E10A.15 | Accession_evidence | NDB | BX284602 | |||||
Public_name | nspe-7 | ||||||||
DB_info | Database | AceView | gene | 2M917 | |||||
WormQTL | gene | WBGene00012593 | |||||||
WormFlux | gene | WBGene00012593 | |||||||
NDB | locus_tag | CELE_Y38E10A.15 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00012593|UniProtKB=Q9NAJ6 | |||||||
family | PTHR34602 | ||||||||
NCBI | gene | 189661 | |||||||
RefSeq | protein | NM_064297.5 | |||||||
TREEFAM | TREEFAM_ID | TF319947 | |||||||
TrEMBL | UniProtAcc | Q9NAJ6 | |||||||
UniProt_GCRP | UniProtAcc | Q9NAJ6 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 19 Nov 2008 14:26:07 | WBPerson2970 | Name_change | CGC_name | nspe-7 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nspe | ||||||||
Allele (17) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (49) | |||||||||
Paralog | WBGene00012587 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00012589 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00012590 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00012591 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00012594 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00012603 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00012604 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00175028 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Automated_description | Enriched in AFD; PLM; hypodermis; and intestine based on tiling array and RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by twenty-eight chemicals including hydrogen sulfide; tryptophan; and bisphenol A based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Protein of unknown function (DUF1412) and Protein of unknown function DUF1412. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y38E10A.15 | |||||||
Corresponding_transcript | Y38E10A.15.1 | ||||||||
Associated_feature | WBsf990155 | ||||||||
WBsf222279 | |||||||||
Experimental_info | RNAi_result | WBRNAi00020285 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00056014 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00036841 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1019513 | ||||||||
Expr1159533 | |||||||||
Expr2014493 | |||||||||
Expr2032732 | |||||||||
Drives_construct | WBCnstr00029893 | ||||||||
Construct_product | WBCnstr00029893 | ||||||||
Microarray_results (14) | |||||||||
Expression_cluster (247) | |||||||||
Map_info | Map | II | Position | 10.5353 | Error | 0.010623 | |||
Positive | Positive_clone | Y38E10A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |