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WormBase Tree Display for Gene: WBGene00009945

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Name Class

WBGene00009945SMapS_parentSequenceF52H3
IdentityVersion3
NameCGC_namebath-38Person_evidenceWBPerson655
Sequence_nameF52H3.3
Molecular_nameF52H3.3
F52H3.3.1
CE03399
Other_nameCELE_F52H3.3Accession_evidenceNDBBX284602
Public_namebath-38
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
222 Aug 2005 16:08:42WBPerson2970Name_changeCGC_namebath-38
302 Mar 2018 10:40:21WBPerson4025EventSplit_intoWBGene00303061
Split_intoWBGene00303061
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classbath
Allele (24)
RNASeq_FPKM (74)
Ortholog (26)
Paralog (80)
Structured_descriptionAutomated_descriptionExpressed in several structures, including hypodermis and pharynx. Is predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; TRAF-like; SKP1/BTB/POZ domain superfamily; and BTB/POZ domain.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF52H3.3
Corresponding_CDS_historyF52H3.3a:wp264
F52H3.3b:wp264
Corresponding_transcriptF52H3.3.1
Other_sequence (44)
Associated_featureWBsf650480
WBsf665227
WBsf666001
WBsf989222
WBsf1012953
WBsf223749
Experimental_infoRNAi_resultWBRNAi00090589Inferred_automaticallyRNAi_primary
WBRNAi00015442Inferred_automaticallyRNAi_primary
WBRNAi00032644Inferred_automaticallyRNAi_primary
WBRNAi00048030Inferred_automaticallyRNAi_primary
WBRNAi00094875Inferred_automaticallyRNAi_primary
WBRNAi00092973Inferred_automaticallyRNAi_primary
Expr_patternExpr145
Expr2100
Expr1012479
Expr1034333
Expr1151848
Expr2009554
Expr2027791
Drives_constructWBCnstr00031796
Construct_productWBCnstr00031796
Microarray_results (18)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:bodywall-muscle_larva_enriched
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:hypodermis_larva_enriched
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
WBPaper00040990:PA14_upregulated
WBPaper00041688:mes-2_mes-4_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00045303:ZK1236.1(tm4178)_upregulated
WBPaper00045314:S.aureus-induced_N2
WBPaper00045521:Gender_Neutral
WBPaper00045861:wdr-5(ok1417)_upregulated
WBPaper00048988:neuron_enriched
WBPaper00048988:neuron_expressed
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
WBPaper00050094:glp-1(gf)_upregulated
WBPaper00050094:mes-2(bn11)_upregulated
WBPaper00050094:mes-6(bn66)_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050859:upregulated_glh-1(gk100)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00051352:Long-Term-Association-Memory_upregulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053321:embryo-to-L1_downregulated_WT_SMARTseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
WBPaper00053321:PGCs_depleted_NuGen
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053599:female_vs_male_upregulated
WBPaper00053599:oocyte_vs_mitosis_downregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00055482:pmt-2(RNAi)_upregulated
WBPaper00055626:pry-1(mu38)_upregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056139:soil-microbiota_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056855:his-72(uge40)_upregulated
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058691:cfp-1(tm6369)_upregulated
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00058948:PA14_downregulated
WBPaper00059440:LAG-1_repressed_4hr-auxin
WBPaper00059471:EGL-43_interacting
WBPaper00059763:neuron_expressed
WBPaper00060661:sensory-neuron_enriched
WBPaper00061203:let-418(n3536)_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061274:hypergravity_15xg_downregulated
WBPaper00061340:ADL_parent
WBPaper00061340:AIN_parent
WBPaper00061340:AMso_parent
WBPaper00061340:Ciliated_non_amphid_neuron
WBPaper00061340:g2_parent
WBPaper00061340:I2_grandparent
WBPaper00061340:M1_parent
WBPaper00061340:Neuroblast_ADE_ADA
WBPaper00061340:Neuroblast_ADF_AWB
WBPaper00061340:Neuroblast_AIZ_FLP
WBPaper00061340:Neuroblast_ASG_AWA
WBPaper00061340:Neuroblast_ASH_RIB
WBPaper00061340:Neuroblast_AWC_SAAVx
WBPaper00061340:Neuroblast_IL1_IL2
WBPaper00061340:Neuroblast_M2_M3
WBPaper00061340:Neuroblast_PVC_LUA
WBPaper00061340:Neuroblast_URX_CEPDx
WBPaper00061340:OLQ_grandparent
WBPaper00061340:Parent_of_hyp1V_and_ant_arc_V
WBPaper00061340:Parent_of_MI_pm1DR
WBPaper00061340:Pharyngeal_neuron
WBPaper00061340:PLM_ALN_grandparent
WBPaper00061340:PLM_ALN_great_grandparent
WBPaper00061340:PVQ_parent
WBPaper00061340:RIA_parent
WBPaper00061340:RIC_parent
WBPaper00061340:RIM_parent
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061479:mep-1(ne4629)_upregulated
WBPaper00061527:bath-38-Y105E8B.7
WBPaper00061530:nhr-49(e2144)_upregulated
WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
WBPaper00062672:let-418(n3536)_upregulated
WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064315:mes-3(bn199)_upregulated_EGCs
WBPaper00064315:mes-4(bn73)_upregulated_EGCs
WBPaper00064871:hypoxia_downregulated_F1
WBPaper00065835:Day11_vs_Day1_upregulated
WBPaper00066062:xrep-4(lax137)_upregulated
cgc4386_cluster_5_3
WBPaper00025141:N2_Expressed_Genes
WBPaper00026980:intestine_enriched
WBPaper00029437:dcr-1_upregulated
WBPaper00030985:Enterococcus_faecalis_upregulated
WBPaper00031003:hlh_1_enriched
WBPaper00031252:AIN-1_IP_enriched
WBPaper00031532:Larva_Pan_Neuronal_Enriched
WBPaper00035227:heat_shock_regulated
WBPaper00036286:Pattern_F
WBPaper00038060:SUMO-1_downregulated
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041207:CE_dauer_up
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041960:N2_fasting_upregulated_anytime
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
WBPaper00057098:SiO2-nanoparticles_upregulated
[cgc5767]:cluster_5
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(66_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
Interaction (13)
Map_infoMapIIPosition1.83513Error0.003981
PositivePositive_cloneF52H3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene