WormBase Tree Display for Sequence: F52H3
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| F52H3 | DNA | F52H3 | 42632 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child (11) | ||||
| CDS_child (241) | ||||||
| Transcript (17) | ||||||
| Nongenomic | yk201c2 | 32387 | 33664 | |||
| yk276d9 | 17883 | 18893 | ||||
| PCR_product (27) | ||||||
| Allele (678) | ||||||
| Oligo_set | Aff_F52H3.1 | 27039 | 24668 | |||
| Aff_F52H3.2 | 22899 | 22244 | ||||
| Aff_F52H3.3 | 35249 | 34280 | ||||
| Aff_F52H3.4 | 32885 | 33575 | ||||
| Aff_F52H3.5 | 21426 | 22112 | ||||
| Aff_F52H3.6 | 18562 | 17870 | ||||
| Aff_F52H3.7 | 1879 | 1113 | ||||
| Feature_object (482) | ||||||
| Feature_data | F52H3:Polysome | 1 | 42632 | |||
| F52H3:TranscriptionallyActiveRegion | 1 | 42632 | ||||
| F52H3:ChIPSeqTF | 1 | 42632 | ||||
| F52H3:TRF | 1 | 42632 | ||||
| F52H3:Dust | 1 | 42632 | ||||
| F52H3:inverted | 1 | 42632 | ||||
| Homol_data (20) | ||||||
| Structure | From | Source | CHROMOSOME_II | |||
| Overlap_right | C18D1 | 42533 | ||||
| Overlap_left | ZK892 | |||||
| Clone_left_end | F52H3 | 1 | ||||
| C18D1 | 42533 | |||||
| Clone_right_end | ZK892 | 7399 | ||||
| DB_info | Database | EMBL | NDB_AC | Z66512 | ||
| NDB_SV | Z66512.1 | |||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Gardner AE | ||||
| From_laboratory | HX | |||||
| Date_directory | 950529 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | F52H3 | ||||
| Reference | WBPaper00022594 | |||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | 9ba213dc4d961f13f9f06b7a395af06c | ||||
| Status | Finished | 29 May 1995 00:00:00 | ||||
| Submitted | 26 Oct 1995 00:00:00 | |||||
| Annotated | 25 Oct 1995 00:00:00 | |||||
| Map | Sequence-II | Ends | Left | 5904 | ||
| Right | 5936 | |||||
| Interpolated_map_position | II | 1.82486 | ||||
| Assembly_tags | Clone left end | 1 | 4 | beginning of F52H3 | ||
| 42533 | 42536 | beginning of C18D1 | ||||
| Clone right end | 7399 | 7402 | end of ZK892 | |||
| annotation | 10303 | 10314 | This region (12bp) not d.s. and covered by only one clone. Available read is terminated. This region was deleted from two other M13 clones. Size confirmed by cosmid and genomic PCRs. | |||
| 10324 | 10406 | This region (10324bp to 10405bp = approx 75bp) is not double-stranded and is covered by only one clone (which has been terminated). This is in the middle of an inverted repeat region and was found to be deleted in two other M13 clones. The size across the inverted repeat region was confirmed by cosmid and genomic PCRs using oligo pairs from outside the repeat region and inside the unique 'loop' of the repeat. | ||||
| 14104 | 14306 | F52H3 : tandem repeats approx 13 copies of a 95mer Starts at 14104 bp CTGGTTGGTAGGCTTGAGCGAATAACAATATACTTGGAATAGGTTTAAAG CTGGCCCACAGTTTCCAAGAGAGTTCGGGCCTGCGGCCCTCAAAC CTGGTTGGTAGGCTTGAGCGAATAACAATATACTTGGAATAGGATTAAAG CTGGCCCACAGTTTCAAAGAGTGTTCGGGCCTGCGgccCTCTAAC CTGGTTGGTAGGCTTGAGTGTACAACAGCATGCTTGAAATAAGATTATAA CCAGCTCACAGTTTCCAAGAGTGTTTGGGCCTGCGgccCTCAAAC CTGGTTGGTAGGCTTAAGCGAATAACAATCTGCTTGGAATAGGATTAAAG CCAGCCCAGTTTCCAAGAGTATTTGGGCCTGCGgcCcTCAAAC CTGGTTGGTACGCCTGAGCgAATAACAATCTGCTTTGAATTGGTTTAAAG CTGGCCCACAGTTTCCAAGAGTGTTCGGGCCTGCGgccCTCAAAC CTGGTTGGTAGGCTTGAGCGAATAACAATCTGCTTgGAATAGGATTAAAG CCAGCCCAGTTTCCAAGAGTATTTgGGCCTGCGgCccTcAAAC CTGGTTGGTAGGCTTgAGCGAATAACAATCTGcTTGGAACAGGATTAAAG CTGGCCCACAGTTTCCAAGAGTGTtCGggcctGCGGCCCTCAAAC CTGGTTGGTAGGCTTAAGCGAATAACAATCTGCTTGGAATAGGATTAAAG CCAGCCCAGTTTCCAAGAGTATTtgGgcctGCGGCCCTCAAAC CTGGTTGGTAGGCTTGAGCGAATAACAATCTGCTTGGAACAGGATTAaAG CTGGCCCACAGTTTCCAAGAGaGTTCGGGCCTGCGGCCCTCAAAC CTGGTTGGTAGGCTTAAGCGAATAACAATCTGCTTGGAATAGGAtTAAAg CCAGCCCAGTTTCCAAGAGTAtTTGGGCCTGCGGCCCTCAAAC CTGGTTGgTAGGCTTGAGCGAATAACAATCTGCTTGGAACAGGATTAAAG CTGGCCCACAGTTTCCAAGAGTGtTcggGcctGCGGCCCTCAAAC CTGGTTGGTAGGcTTGAGCGAATAACAATCTGCTTGGAATAGGATTAAAG CCAGCCCAGTTTCCAAGAGTATTTGGGCCTGCGGCCCTCAAAC CTGGTTGGTACGCTTGAGCGAATAACAATCTGCTTTGAATAGGATTAAAG CCAGCCCAGTTTCCAAGAGTATtTGGGCCTGCGGCCCTCAAAC CTGGCTGGTAGGCTTGAGAAAATAACAATCTGCTTTGAATAGGTTTAaAG CTGGcCCACAGtTTCCAAGATTGTTCCCTCAAAC CTGGTTGTTGGCTTAGAAT Finishes at around 15430 bp Size confirmed by cosmid and genomic PCRs. | ||||
| 14306 | 14615 | F52H3 : tandem repeats approx 13 copies of a 95mer Starts at 14104 bp CTGGTTGGTAGGCTTGAGCGAATAACAATATACTTGGAATAGGTTTAAAG CTGGCCCACAGTTTCCAAGAGAGTTCGGGCCTGCGGCCCTCAAAC CTGGTTGGTAGGCTTGAGCGAATAACAATATACTTGGAATAGGATTAAAG CTGGCCCACAGTTTCAAAGAGTGTTCGGGCCTGCGgccCTCTAAC CTGGTTGGTAGGCTTGAGTGTACAACAGCATGCTTGAAATAAGATTATAA CCAGCTCACAGTTTCCAAGAGTGTTTGGGCCTGCGgccCTCAAAC CTGGTTGGTAGGCTTAAGCGAATAACAATCTGCTTGGAATAGGATTAAAG CCAGCCCAGTTTCCAAGAGTATTTGGGCCTGCGgcCcTCAAAC CTGGTTGGTACGCCTGAGCgAATAACAATCTGCTTTGAATTGGTTTAAAG CTGGCCCACAGTTTCCAAGAGTGTTCGGGCCTGCGgccCTCAAAC CTGGTTGGTAGGCTTGAGCGAATAACAATCTGCTTgGAATAGGATTAAAG CCAGCCCAGTTTCCAAGAGTATTTgGGCCTGCGgCccTcAAAC CTGGTTGGTAGGCTTgAGCGAATAACAATCTGcTTGGAACAGGATTAAAG CTGGCCCACAGTTTCCAAGAGTGTtCGggcctGCGGCCCTCAAAC CTGGTTGGTAGGCTTAAGCGAATAACAATCTGCTTGGAATAGGATTAAAG CCAGCCCAGTTTCCAAGAGTATTtgGgcctGCGGCCCTCAAAC CTGGTTGGTAGGCTTGAGCGAATAACAATCTGCTTGGAACAGGATTAaAG CTGGCCCACAGTTTCCAAGAGaGTTCGGGCCTGCGGCCCTCAAAC CTGGTTGGTAGGCTTAAGCGAATAACAATCTGCTTGGAATAGGAtTAAAg CCAGCCCAGTTTCCAAGAGTAtTTGGGCCTGCGGCCCTCAAAC CTGGTTGgTAGGCTTGAGCGAATAACAATCTGCTTGGAACAGGATTAAAG CTGGCCCACAGTTTCCAAGAGTGtTcggGcctGCGGCCCTCAAAC CTGGTTGGTAGGcTTGAGCGAATAACAATCTGCTTGGAATAGGATTAAAG CCAGCCCAGTTTCCAAGAGTATTTGGGCCTGCGGCCCTCAAAC CTGGTTGGTACGCTTGAGCGAATAACAATCTGCTTTGAATAGGATTAAAG CCAGCCCAGTTTCCAAGAGTATtTGGGCCTGCGGCCCTCAAAC CTGGCTGGTAGGCTTGAGAAAATAACAATCTGCTTTGAATAGGTTTAaAG CTGGcCCACAGtTTCCAAGATTGTTCCCTCAAAC CTGGTTGTTGGCTTAGAAT Finishes at around 15430 bp Size confirmed by cosmid and genomic PCRs. | ||||
| 15037 | 15093 | Region of poor d.s. (+) but sequence confirmed by terminator on opposite strand (14740 to 14790 bp : 50bp). Also : this is in the middle of a set of tandem repeats covering approx 2kb. | ||||
| 14616 | 15038 | F52H3 : tandem repeats approx 13 copies of a 95mer Starts at 14104bp CTGGTTGGTAGGCTTGAGCGAATAACAATATACTTGGAATAGGTTTAAAG CTGGCCCACAGTTTCCAAGAGAGTTCGGGCCTGCGGCCCTCAAAC CTGGTTGGTAGGCTTGAGCGAATAACAATATACTTGGAATAGGATTAAAG CTGGCCCACAGTTTCAAAGAGTGTTCGGGCCTGCGgccCTCTAAC CTGGTTGGTAGGCTTGAGTGTACAACAGCATGCTTGAAATAAGATTATAA CCAGCTCACAGTTTCCAAGAGTGTTTGGGCCTGCGgccCTCAAAC CTGGTTGGTAGGCTTAAGCGAATAACAATCTGCTTGGAATAGGATTAAAG CCAGCCCAGTTTCCAAGAGTATTTGGGCCTGCGgcCcTCAAAC CTGGTTGGTACGCCTGAGCgAATAACAATCTGCTTTGAATTGGTTTAAAG CTGGCCCACAGTTTCCAAGAGTGTTCGGGCCTGCGgccCTCAAAC CTGGTTGGTAGGCTTGAGCGAATAACAATCTGCTTgGAATAGGATTAAAG CCAGCCCAGTTTCCAAGAGTATTTgGGCCTGCGgCccTcAAAC CTGGTTGGTAGGCTTgAGCGAATAACAATCTGcTTGGAACAGGATTAAAG CTGGCCCACAGTTTCCAAGAGTGTtCGggcctGCGGCCCTCAAAC CTGGTTGGTAGGCTTAAGCGAATAACAATCTGCTTGGAATAGGATTAAAG CCAGCCCAGTTTCCAAGAGTATTtgGgcctGCGGCCCTCAAAC CTGGTTGGTAGGCTTGAGCGAATAACAATCTGCTTGGAACAGGATTAaAG CTGGCCCACAGTTTCCAAGAGaGTTCGGGCCTGCGGCCCTCAAAC CTGGTTGGTAGGCTTAAGCGAATAACAATCTGCTTGGAATAGGAtTAAAg CCAGCCCAGTTTCCAAGAGTAtTTGGGCCTGCGGCCCTCAAAC CTGGTTGgTAGGCTTGAGCGAATAACAATCTGCTTGGAACAGGATTAAAG CTGGCCCACAGTTTCCAAGAGTGtTcggGcctGCGGCCCTCAAAC CTGGTTGGTAGGcTTGAGCGAATAACAATCTGCTTGGAATAGGATTAAAG CCAGCCCAGTTTCCAAGAGTATTTGGGCCTGCGGCCCTCAAAC CTGGTTGGTACGCTTGAGCGAATAACAATCTGCTTTGAATAGGATTAAAG CCAGCCCAGTTTCCAAGAGTATtTGGGCCTGCGGCCCTCAAAC CTGGCTGGTAGGCTTGAGAAAATAACAATCTGCTTTGAATAGGTTTAaAG CTGGcCCACAGtTTCCAAGATTGTTCCCTCAAAC CTGGTTGTTGGCTTAGAAT Finishes at around 15430bp Size confirmed by cosmid and genomic PCRs | ||||
| 15038 | 15429 | F52H3 : tandem repeats approx 13 copies of a 95mer Starts at 14104 bp CTGGTTGGTAGGCTTGAGCGAATAACAATATACTTGGAATAGGTTTAAAG CTGGCCCACAGTTTCCAAGAGAGTTCGGGCCTGCGGCCCTCAAAC CTGGTTGGTAGGCTTGAGCGAATAACAATATACTTGGAATAGGATTAAAG CTGGCCCACAGTTTCAAAGAGTGTTCGGGCCTGCGgccCTCTAAC CTGGTTGGTAGGCTTGAGTGTACAACAGCATGCTTGAAATAAGATTATAA CCAGCTCACAGTTTCCAAGAGTGTTTGGGCCTGCGgccCTCAAAC CTGGTTGGTAGGCTTAAGCGAATAACAATCTGCTTGGAATAGGATTAAAG CCAGCCCAGTTTCCAAGAGTATTTGGGCCTGCGgcCcTCAAAC CTGGTTGGTACGCCTGAGCgAATAACAATCTGCTTTGAATTGGTTTAAAG CTGGCCCACAGTTTCCAAGAGTGTTCGGGCCTGCGgccCTCAAAC CTGGTTGGTAGGCTTGAGCGAATAACAATCTGCTTgGAATAGGATTAAAG CCAGCCCAGTTTCCAAGAGTATTTgGGCCTGCGgCccTcAAAC CTGGTTGGTAGGCTTgAGCGAATAACAATCTGcTTGGAACAGGATTAAAG CTGGCCCACAGTTTCCAAGAGTGTtCGggcctGCGGCCCTCAAAC CTGGTTGGTAGGCTTAAGCGAATAACAATCTGCTTGGAATAGGATTAAAG CCAGCCCAGTTTCCAAGAGTATTtgGgcctGCGGCCCTCAAAC CTGGTTGGTAGGCTTGAGCGAATAACAATCTGCTTGGAACAGGATTAaAG CTGGCCCACAGTTTCCAAGAGaGTTCGGGCCTGCGGCCCTCAAAC CTGGTTGGTAGGCTTAAGCGAATAACAATCTGCTTGGAATAGGAtTAAAg CCAGCCCAGTTTCCAAGAGTAtTTGGGCCTGCGGCCCTCAAAC CTGGTTGgTAGGCTTGAGCGAATAACAATCTGCTTGGAACAGGATTAAAG CTGGCCCACAGTTTCCAAGAGTGtTcggGcctGCGGCCCTCAAAC CTGGTTGGTAGGcTTGAGCGAATAACAATCTGCTTGGAATAGGATTAAAG CCAGCCCAGTTTCCAAGAGTATTTGGGCCTGCGGCCCTCAAAC CTGGTTGGTACGCTTGAGCGAATAACAATCTGCTTTGAATAGGATTAAAG CCAGCCCAGTTTCCAAGAGTATtTGGGCCTGCGGCCCTCAAAC CTGGCTGGTAGGCTTGAGAAAATAACAATCTGCTTTGAATAGGTTTAaAG CTGGcCCACAGtTTCCAAGATTGTTCCCTCAAAC CTGGTTGTTGGCTTAGAAT Finishes at around 15430 bp. Size confirmed by cosmid and genomic PCRs. | ||||
| 24606 | 24607 | A single M13 read was missing 2bp (CA) All other reads (5 +/6-) agree | ||||
| Method | Genomic_canonical |
