WormBase Tree Display for Gene: WBGene00009180
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| WBGene00009180 | SMap | S_parent | Sequence | F26H11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | nurf-1 | Person_evidence | WBPerson1730 | |||||
| WBPerson268 | |||||||||
| Sequence_name | F26H11.2 | ||||||||
| Molecular_name (57) | |||||||||
| Other_name | CELE_F26H11.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | nurf-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 01 Jul 2004 15:37:03 | WBPerson1983 | Event | Acquires_merge | WBGene00009181 | ||||
| 3 | 09 Sep 2005 11:06:53 | WBPerson2970 | Name_change | CGC_name | nurf-1 | ||||
| Acquires_merge | WBGene00009181 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nurf | ||||||||
| Allele (462) | |||||||||
| Possibly_affected_by | WBVar02152867 | ||||||||
| Strain | WBStrain00027435 | ||||||||
| WBStrain00027440 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (47) | |||||||||
| Paralog | WBGene00001470 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00010199 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00017423 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019217 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021636 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00022473 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | nurf-1 encodes the C. elegans ortholog of Drosophila NURF301, a component of the NURF chromatin remodeling complex; in C. elegans, nurf-1 acts with isw-1 to regulate vulval development. | Paper_evidence | WBPaper00027681 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 31 Aug 2011 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and methylated histone binding activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of NURF complex. Expressed in several structures, including head; pharyngeal-intestinal valve; pharynx; tail; and vulva. Human ortholog(s) of this gene implicated in Alzheimer's disease and amyotrophic lateral sclerosis. Is an ortholog of human BPTF (bromodomain PHD finger transcription factor). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:10652 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3581) | ||||
| DOID:0070514 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3581) | ||||||
| DOID:332 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3581) | ||||||
| Molecular_info | Corresponding_CDS (17) | ||||||||
| Corresponding_CDS_history | F26H11.2a:wp108 | ||||||||
| F26H11.2a:wp229 | |||||||||
| F26H11.2b:wp108 | |||||||||
| F26H11.2b:wp229 | |||||||||
| F26H11.2c:wp229 | |||||||||
| F26H11.2d:wp188 | |||||||||
| F26H11.2g:wp274 | |||||||||
| F26H11.2h:wp274 | |||||||||
| Corresponding_transcript (23) | |||||||||
| Other_sequence (22) | |||||||||
| Associated_feature (34) | |||||||||
| Transcription_factor | WBTranscriptionFactor000776 | ||||||||
| Experimental_info | RNAi_result (36) | ||||||||
| Expr_pattern (11) | |||||||||
| Drives_construct | WBCnstr00012667 | ||||||||
| WBCnstr00014344 | |||||||||
| WBCnstr00014346 | |||||||||
| WBCnstr00014347 | |||||||||
| WBCnstr00014348 | |||||||||
| WBCnstr00014362 | |||||||||
| Construct_product | WBCnstr00016587 | ||||||||
| WBCnstr00016607 | |||||||||
| Microarray_results (72) | |||||||||
| Expression_cluster (198) | |||||||||
| SAGE_tag (16) | |||||||||
| Interaction (36) | |||||||||
| Map_info | Map | II | Position | 22.9649 | Error | 0.001067 | |||
| Positive | Positive_clone | F26H11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (16) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
