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WormBase Tree Display for Gene: WBGene00009180

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Name Class

WBGene00009180SMapS_parentSequenceF26H11
IdentityVersion3
NameCGC_namenurf-1Person_evidenceWBPerson1730
WBPerson268
Sequence_nameF26H11.2
Molecular_name (57)
Other_nameCELE_F26H11.2Accession_evidenceNDBBX284602
Public_namenurf-1
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:49WBPerson1971EventImportedInitial conversion from CDS class of WS125
201 Jul 2004 15:37:03WBPerson1983EventAcquires_mergeWBGene00009181
309 Sep 2005 11:06:53WBPerson2970Name_changeCGC_namenurf-1
Acquires_mergeWBGene00009181
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnurf
Allele (462)
Possibly_affected_byWBVar02152867
StrainWBStrain00027435
WBStrain00027440
RNASeq_FPKM (74)
GO_annotation (11)
OrthologWBGene00032278Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00062238Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00152853Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00133936Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00112320Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00032277Caenorhabditis briggsaeFrom_analysisOrthoMCL
WormBase-Compara
WBGene00083359Caenorhabditis remaneiFrom_analysisOMA
WormBase-Compara
WBGene00145989Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00223902Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g6798Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g5621Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g18263Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g18264Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g1395Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g17373Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP32.g6300Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g21970Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g21971Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g1434Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g3757Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g3758Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g3759Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g3761Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00049.g2586Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00049.g2587Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-nurf-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_II.g4997Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15668Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15674Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01177.g19029Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_19700Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_004668Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g10966Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g12353Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g12593Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g5943Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20165600Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_20165700Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g6532Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00248197Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00248198Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00288299Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0000541Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-030131-3200Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:3581Homo sapiensFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
MGI:2444008Mus musculusFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:1307039Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ParalogWBGene00001470Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00010199Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00017423Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00019217Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00021636Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00022473Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionnurf-1 encodes the C. elegans ortholog of Drosophila NURF301, a component of the NURF chromatin remodeling complex; in C. elegans, nurf-1 acts with isw-1 to regulate vulval development.Paper_evidenceWBPaper00027681
Curator_confirmedWBPerson1843
Date_last_updated31 Aug 2011 00:00:00
Automated_descriptionPredicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and methylated histone binding activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of NURF complex. Expressed in several structures, including head; pharyngeal-intestinal valve; pharynx; tail; and vulva. Human ortholog(s) of this gene implicated in Alzheimer's disease and amyotrophic lateral sclerosis. Is an ortholog of human BPTF (bromodomain PHD finger transcription factor).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:10652Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:3581)
DOID:0070514Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:3581)
DOID:332Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:3581)
Molecular_infoCorresponding_CDS (17)
Corresponding_CDS_historyF26H11.2a:wp108
F26H11.2a:wp229
F26H11.2b:wp108
F26H11.2b:wp229
F26H11.2c:wp229
F26H11.2d:wp188
F26H11.2g:wp274
F26H11.2h:wp274
Corresponding_transcript (23)
Other_sequence (22)
Associated_feature (34)
Transcription_factorWBTranscriptionFactor000776
Experimental_infoRNAi_result (36)
Expr_pattern (11)
Drives_constructWBCnstr00012667
WBCnstr00014344
WBCnstr00014346
WBCnstr00014347
WBCnstr00014348
WBCnstr00014362
Construct_productWBCnstr00016587
WBCnstr00016607
Microarray_results (72)
Expression_cluster (198)
SAGE_tag (16)
Interaction (36)
Map_infoMapIIPosition22.9649Error0.001067
PositivePositive_cloneF26H11Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (16)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene