WormBase Tree Display for Gene: WBGene00008681
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| WBGene00008681 | SMap | S_parent | Sequence | F11A6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | scrm-4 | Paper_evidence | WBPaper00029228 | |||||
| Person_evidence | WBPerson1606 | ||||||||
| Sequence_name | F11A6.2 | ||||||||
| Molecular_name | F11A6.2 | ||||||||
| F11A6.2.1 | |||||||||
| CE41222 | |||||||||
| Other_name | plsc-4 | Person_evidence | WBPerson1626 | ||||||
| CELE_F11A6.2 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | scrm-4 | ||||||||
| DB_info | Database | AceView | gene | 1M270 | |||||
| WormQTL | gene | WBGene00008681 | |||||||
| WormFlux | gene | WBGene00008681 | |||||||
| NDB | locus_tag | CELE_F11A6.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00008681|UniProtKB=O62149 | |||||||
| family | PTHR23248 | ||||||||
| NCBI | gene | 184340 | |||||||
| RefSeq | protein | NM_060574.5 | |||||||
| TREEFAM | TREEFAM_ID | TF314939 | |||||||
| TrEMBL | UniProtAcc | O62149 | |||||||
| UniProt_GCRP | UniProtAcc | O62149 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 16 Oct 2006 17:00:28 | WBPerson2970 | Name_change | CGC_name | plsc-4 | ||||
| 3 | 03 May 2007 10:33:07 | WBPerson2970 | Name_change | CGC_name | scrm-4 | ||||
| Other_name | plsc-4 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | scrm | ||||||||
| Allele | WBVar00094561 | Inferred_automatically | From strain object: RB2584 | ||||||
| WBVar00094578 | Inferred_automatically | From strain object: RB2597 | |||||||
| WBVar01346301 | |||||||||
| WBVar01499739 | |||||||||
| WBVar02128581 | |||||||||
| WBVar00346480 | |||||||||
| WBVar00346481 | |||||||||
| WBVar00346482 | |||||||||
| WBVar00157588 | |||||||||
| WBVar00157589 | |||||||||
| WBVar01713362 | |||||||||
| WBVar01713363 | |||||||||
| WBVar01532284 | |||||||||
| WBVar01499788 | |||||||||
| WBVar01499054 | |||||||||
| WBVar00539713 | |||||||||
| WBVar00249659 | |||||||||
| WBVar00673994 | |||||||||
| WBVar00673995 | |||||||||
| WBVar00673996 | |||||||||
| WBVar00673997 | |||||||||
| WBVar00673998 | |||||||||
| WBVar00673999 | |||||||||
| WBVar01285323 | |||||||||
| WBVar00674000 | |||||||||
| WBVar01285324 | |||||||||
| WBVar01285325 | |||||||||
| WBVar00674001 | |||||||||
| WBVar02066484 | |||||||||
| WBVar01285326 | |||||||||
| WBVar00674002 | |||||||||
| WBVar00674003 | |||||||||
| WBVar00674004 | |||||||||
| WBVar01498959 | |||||||||
| Strain | WBStrain00033259 | ||||||||
| WBStrain00033272 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00037188 | ||||||||
| 00037189 | |||||||||
| 00037190 | |||||||||
| 00116557 | |||||||||
| 00116558 | |||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00014200 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00011935 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015437 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00009753 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019531 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00013052 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019530 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00235369 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | scrm-4 encodes a putative phospholipid scramblase homologous to humanPLSCR1-5, and paralogous to other C. elegans SCRMs (e.g., SCRM-1); inapoptotic germline cells, SCRM-4 is fully dispensable for normally rapidengulfment and largely dispensable for phosphatidylserine exposure;SCRM-4 does not bind WAH-1 in vitro, and scrm-4(tm624) mutants have noobvious phenotype. | Paper_evidence | WBPaper00004911 | |||||
| WBPaper00012809 | |||||||||
| WBPaper00013208 | |||||||||
| WBPaper00013590 | |||||||||
| WBPaper00029228 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 16 May 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable phospholipid scramblase activity. Predicted to be involved in plasma membrane phospholipid scrambling. Predicted to be located in plasma membrane. Is an ortholog of several human genes including PLSCR2 (phospholipid scramblase 2); PLSCR3 (phospholipid scramblase 3); and PLSCR4 (phospholipid scramblase 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F11A6.2 | |||||||
| Corresponding_CDS_history | F11A6.2:wp114 | ||||||||
| F11A6.2:wp177 | |||||||||
| Corresponding_transcript | F11A6.2.1 | ||||||||
| Associated_feature | WBsf220358 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00030813 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00062200 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044359 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00097538 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003364 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1012624 | ||||||||
| Expr1033778 | |||||||||
| Expr1148299 | |||||||||
| Expr2015653 | |||||||||
| Expr2033885 | |||||||||
| Drives_construct | WBCnstr00032775 | ||||||||
| Construct_product | WBCnstr00032775 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (290) | |||||||||
| Interaction | WBInteraction000050587 | ||||||||
| WBInteraction000187215 | |||||||||
| WBInteraction000366772 | |||||||||
| WBInteraction000456427 | |||||||||
| WBInteraction000580606 | |||||||||
| Map_info | Map | I | Position | 9.55039 | Error | 0.005902 | |||
| Positive | Positive_clone | F11A6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028483 | ||||||||
| WBPaper00028527 | |||||||||
| WBPaper00029228 | |||||||||
| WBPaper00030738 | |||||||||
| WBPaper00032961 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00042257 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058537 | |||||||||
| WBPaper00063045 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
