WormBase Tree Display for Gene: WBGene00019531
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| WBGene00019531 | SMap | S_parent | Sequence | K08D10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | scrm-5 | Paper_evidence | WBPaper00029228 | |||||
| Person_evidence | WBPerson1606 | ||||||||
| Sequence_name | K08D10.8 | ||||||||
| Molecular_name | K08D10.8 | ||||||||
| K08D10.8.1 | |||||||||
| CE07360 | |||||||||
| K08D10.8.2 | |||||||||
| Other_name | CELE_K08D10.8 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | scrm-5 | ||||||||
| DB_info | Database | AceView | gene | 4E929 | |||||
| WormQTL | gene | WBGene00019531 | |||||||
| WormFlux | gene | WBGene00019531 | |||||||
| NDB | locus_tag | CELE_K08D10.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00019531|UniProtKB=Q21318 | |||||||
| family | PTHR23248 | ||||||||
| NCBI | gene | 177180 | |||||||
| RefSeq | protein | NM_068099.7 | |||||||
| TREEFAM | TREEFAM_ID | TF314939 | |||||||
| TrEMBL | UniProtAcc | Q21318 | |||||||
| UniProt_GCRP | UniProtAcc | Q21318 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 03 May 2007 10:33:07 | WBPerson2970 | Name_change | CGC_name | scrm-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | scrm | ||||||||
| Allele (45) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00071271 | ||||||||
| 00071272 | |||||||||
| 00071273 | |||||||||
| 00071274 | |||||||||
| 00071275 | |||||||||
| 00124368 | |||||||||
| 00124369 | |||||||||
| Ortholog (24) | |||||||||
| Paralog | WBGene00008681 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00009752 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| WBGene00009753 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00011935 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00013052 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00014200 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00015437 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019530 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00235369 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | scrm-5 encodes a putative phospholipid scramblase homologous to humanPLSCR1-5, and paralogous to other C. elegans SCRMs (e.g., SCRM-1);scrm-5(RNAi) animals have no obvious phenotype. | Paper_evidence | WBPaper00004911 | |||||
| WBPaper00012809 | |||||||||
| WBPaper00013208 | |||||||||
| WBPaper00013590 | |||||||||
| WBPaper00029228 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 16 May 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable phospholipid scramblase activity. Predicted to be involved in plasma membrane phospholipid scrambling. Predicted to be located in plasma membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K08D10.8 | |||||||
| Corresponding_transcript | K08D10.8.1 | ||||||||
| K08D10.8.2 | |||||||||
| Associated_feature | WBsf660072 | ||||||||
| WBsf228163 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00034122 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00050259 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00097542 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1038439 | ||||||||
| Expr1153955 | |||||||||
| Expr2015654 | |||||||||
| Expr2033886 | |||||||||
| Drives_construct | WBCnstr00025776 | ||||||||
| Construct_product | WBCnstr00025776 | ||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (158) | |||||||||
| Interaction (116) | |||||||||
| Map_info | Map | IV | Position | -0.621194 | Error | 0.0308 | |||
| Positive | Positive_clone | K08D10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029228 | ||||||||
| WBPaper00030738 | |||||||||
| WBPaper00042257 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
