WormBase Tree Display for Gene: WBGene00006749

WBGene00006749 SMap: S_parent: Sequence: CHROMOSOME_X
  Identity: Version: 1
    Name: CGC_name: unc-9 Person_evidence: WBPerson261
      Sequence_name: R12H7.1
      Molecular_name: R12H7.1a
        R12H7.1a.1
        CE28246
        R12H7.1b
        CE51729
        R12H7.1a.2
        R12H7.1b.1
      Other_name: CELE_R12H7.1 Accession_evidence: NDB BX284606
      Public_name: unc-9
    DB_info: Database: AceView gene XN833
        WormQTL gene WBGene00006749
        WormFlux gene WBGene00006749
        NDB locus_tag CELE_R12H7.1
        Panther gene CAEEL|WormBase=WBGene00006749|UniProtKB=O01393
          family PTHR11893
        NCBI gene 181443
        RefSeq protein NM_001330917.4
            NM_171790.8
        SwissProt UniProtAcc O01393
        TrEMBL UniProtAcc A0A1C3NSM1
        UniProt_GCRP UniProtAcc O01393
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:41 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info (11)
  Molecular_info: Corresponding_CDS: R12H7.1a
      R12H7.1b
    Corresponding_CDS_history: R12H7.1:wp52
    Corresponding_transcript: R12H7.1a.1
      R12H7.1a.2
      R12H7.1b.1
    Other_sequence (38)
    Associated_feature (22)
  Experimental_info: RNAi_result: WBRNAi00089959 Inferred_automatically: RNAi_primary
      WBRNAi00027706 Inferred_automatically: RNAi_primary
      WBRNAi00101970 Inferred_automatically: RNAi_primary
      WBRNAi00090119 Inferred_automatically: RNAi_primary
      WBRNAi00101969 Inferred_automatically: RNAi_primary
      WBRNAi00101971 Inferred_automatically: RNAi_primary
      WBRNAi00051863 Inferred_automatically: RNAi_primary
      WBRNAi00090277 Inferred_automatically: RNAi_primary
      WBRNAi00089762 Inferred_automatically: RNAi_primary
    Expr_pattern (11)
    Drives_construct: WBCnstr00005223
      WBCnstr00011756
      WBCnstr00012540
      WBCnstr00013463
      WBCnstr00016962
      WBCnstr00018785
      WBCnstr00019879
      WBCnstr00034174
      WBCnstr00042717
    Construct_product: WBCnstr00004912
      WBCnstr00007077
      WBCnstr00014822
      WBCnstr00017891
      WBCnstr00018129
      WBCnstr00019880
      WBCnstr00021094
      WBCnstr00022772
      WBCnstr00022774
      WBCnstr00034174
    Antibody: WBAntibody00001277
      WBAntibody00001907
    Microarray_results (20)
    Expression_cluster: WBPaper00005700:transmembrane_protein
      WBPaper00031040:TGF-beta_adult_upregulated
      WBPaper00033065:clk-1(qm30)_upregulated
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:A-class-motor-neurons_larva_enriched
      WBPaper00037950:all-neurons_larva_enriched
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_CoreEnriched
      WBPaper00037950:dopaminergic-neurons_embryo_enriched
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:GABAergic-motor-neurons_embryo_enriched
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_larva_enriched
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00040420:FLP_enriched
      WBPaper00040560:hpl-2_embryo_upregulated
      WBPaper00044656:tatn-1(qd182)_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045974:NSM_enriched_totalRNA_RNAseq
      WBPaper00045974:NSM_enriched_totalRNA_tiling
      WBPaper00046509:htz-1(ok3099)_downregulated
      WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
      WBPaper00048988:neuron_enriched
      WBPaper00048988:neuron_expressed
      WBPaper00049545:cco-1(RNAi)_upregulated
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00050053:muscle_enriched_Day4
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_24-cell-embryo
      WBPaper00050163:let-418(RNAi)_upregulated_24-cell-embryo
      WBPaper00050163:let-418(RNAi)_upregulated_100-cell-embryo
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050412:cco-1(RNAi)_upregulated_N2
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00051404:alg-1(gk214)_upregulated
      WBPaper00051404:alg-2(ok304)_upregulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053321:PGCs_depleted_NuGen
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055482:Tunicamycin_downregulated
      WBPaper00055565:AVK_enriched
      WBPaper00055626:pry-1(mu38)_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056826:hmc_biased
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058711:paraquat_downregulated
      WBPaper00058969:RIS_enriched
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059421:daf-1(m40);daf-3(mgDf90)_downregulated
      WBPaper00059421:daf-3(mgDf90)_downregulated
      WBPaper00059471:EGL-43_interacting
      WBPaper00059566:wdr-23(mac32)_upregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059763:neuron_expressed
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060459:bcat-1(RNAi)_upregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061007:HB101_upregulated
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:AIB
      WBPaper00061340:AIM
      WBPaper00061340:ALM_PLM
      WBPaper00061340:DA_DB
      WBPaper00061340:hmc
      WBPaper00061340:hmc_homolog
      WBPaper00061340:mu_int_mu_anal
      WBPaper00061340:RIB
      WBPaper00061340:RMD
      WBPaper00061340:SIA
      WBPaper00061340:SMD
      WBPaper00061405:S.aureus_downregulated_starvation
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061527:kin-29_2839-unc-9_3883
      WBPaper00061527:sol-1-jnk-1_18695
      WBPaper00061651:DA9_enriched
      WBPaper00061651:DA_enriched
      WBPaper00061651:DB_enriched
      WBPaper00061651:MC_enriched
      WBPaper00061651:URB_enriched
      WBPaper00061651:VA12_enriched
      WBPaper00061651:VC_4_5_enriched
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00064721:fasn-1(g14)_downregulated_starved
      WBPaper00064939:vit-5(RNAi)_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
      WBPaper00065749:Heat-Shock_downregulated_N2
      WBPaper00065835:Day5_vs_Day1_downregulated
      WBPaper00065841:108_0
      WBPaper00065841:118_0
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00066110:Cisplatin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      cgc4489_group_15
      WBPaper00025141:unc-4::GFP_Enriched_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00029437:dcr-1_upregulated
      WBPaper00030839:Embryo_A_Class
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00030839:Larval_A_Class
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00030985:Serratia_marcesens_downregulated
      WBPaper00031003:24hr_muscle_enriched
      WBPaper00031003:total_muscle_enriched
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00031832:slr-2_regulated
      WBPaper00034661:AgNPs_downregulated
      WBPaper00034739:N2moreDR1350
      WBPaper00035084:L1_enriched_AIN-2_IP
      WBPaper00035588:alg-1(-)_upregulated
      WBPaper00036123:Atrazine_regulated
      WBPaper00036286:Pattern_C
      WBPaper00038304:octr-1_regulated
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040876:mir-35_downregulated
      WBPaper00040985:AIN-2_asynchronous_muscle
      WBPaper00041939:control_vs_UVC-EtBr-exposed_3h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00042274:tbx-2(bx59)_upregulated
      WBPaper00042548:miRISC_enriched
      WBPaper00045673:colistin_upregulated
      WBPaper00048989:N2_rapamycin_upregulated
      WBPaper00057098:SiO2-nanoparticles_upregulated
    Interaction (65)
  Map_info: Map: X Position: 10.2432 Error: 0.033106
    Well_ordered
    Positive: Inside_rearr: yDp4
        yDp5
        yDp6
        yDp7
        yDp8
        yDp9
        yDp10
        yDp11
        yDp12
      Positive_clone: R12H7 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: 2_point (15)
      Multi_point (65)
      Pos_neg_data (29)
    Landmark_gene
  Reference: WBPaper00000031
    WBPaper00000608
    WBPaper00000958
    WBPaper00001281
    WBPaper00001289
    WBPaper00001455
    WBPaper00001852
    WBPaper00001854
    WBPaper00002074
    WBPaper00002358
    WBPaper00002440
    WBPaper00002487
    WBPaper00002950
    WBPaper00003300
    WBPaper00003309
    WBPaper00003828
    WBPaper00003954
    WBPaper00004182
    WBPaper00004217
    WBPaper00004649
    WBPaper00006103
    WBPaper00006384
    WBPaper00010911
    WBPaper00011032
    WBPaper00011771
    WBPaper00013716
    WBPaper00013717
    WBPaper00013842
    WBPaper00013902
    WBPaper00013908
    WBPaper00014206
    WBPaper00014310
    WBPaper00014761
    WBPaper00014842
    WBPaper00015628
    WBPaper00015652
    WBPaper00016131
    WBPaper00016349
    WBPaper00016500
    WBPaper00016505
    WBPaper00016555
    WBPaper00016578
    WBPaper00016942
    WBPaper00018354
    WBPaper00019167
    WBPaper00019359
    WBPaper00019608
    WBPaper00020954
    WBPaper00020962
    WBPaper00020982
    WBPaper00023627
    WBPaper00025594
    WBPaper00025689
    WBPaper00026145
    WBPaper00026693
    WBPaper00027055
    WBPaper00027864
    WBPaper00028155
    WBPaper00028277
    WBPaper00028502
    WBPaper00028880
    WBPaper00029020
    WBPaper00030343
    WBPaper00030626
    WBPaper00030757
    WBPaper00030879
    WBPaper00032013
    WBPaper00033075
    WBPaper00033138
    WBPaper00033546
    WBPaper00037203
    WBPaper00039235
    WBPaper00040385
    WBPaper00040432
    WBPaper00041768
    WBPaper00041950
    WBPaper00042443
    WBPaper00043411
    WBPaper00043908
    WBPaper00044311
    WBPaper00047675
    WBPaper00048285
    WBPaper00049295
    WBPaper00050713
    WBPaper00052792
    WBPaper00052797
    WBPaper00052819
    WBPaper00054278
    WBPaper00054762
    WBPaper00055514
    WBPaper00056066
    WBPaper00057671
    WBPaper00060250
    WBPaper00060384
    WBPaper00061654
    WBPaper00062332
    WBPaper00063826
    WBPaper00064677
    WBPaper00065340
    WBPaper00065757
    WBPaper00065804
  Method: Gene