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WormBase Tree Display for Gene: WBGene00004922

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Name Class

WBGene00004922EvidencePerson_evidenceWBPerson508
SMapS_parentSequenceCHROMOSOME_III
IdentityVersion2
NameCGC_namesnt-2Person_evidenceWBPerson508
Sequence_nameF42G9.7
Molecular_nameF42G9.7
F42G9.7.1
CE37915
Other_nameCELE_F42G9.7Accession_evidenceNDBBX284603
Public_namesnt-2
DB_infoDatabaseAceViewgene3B404
WormQTLgeneWBGene00004922
WormFluxgeneWBGene00004922
NDBlocus_tagCELE_F42G9.7
PanthergeneCAEEL|WormBase=WBGene00004922|UniProtKB=K8FE10
familyPTHR10024
NCBIgene185680
RefSeqproteinNM_064860.6
SwissProtUniProtAccK8FE10
UniProt_GCRPUniProtAccK8FE10
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:36WBPerson1971EventImportedInitial conversion from geneace
220 Oct 2005 08:55:16WBPerson1867EventAcquires_mergeWBGene00015174
Acquires_mergeWBGene00015174
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsnt
Allele (159)
RNASeq_FPKM (74)
GO_annotation (20)
Ortholog (48)
ParalogWBGene00004921Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00004923Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00004924Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00004926Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00011682Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00004925Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004316Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00006306Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00020861Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable several functions, including calcium ion binding activity; phospholipid binding activity; and syntaxin binding activity. Predicted to be involved in cellular response to calcium ion; regulation of secretion by cell; and synaptic vesicle cycle. Located in dense core granule. Expressed in head neurons; intestine; and tail neurons.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF42G9.7
Corresponding_CDS_historyF42G9.7:wp137
Corresponding_transcriptF42G9.7.1
Other_sequence (19)
Associated_featureWBsf650817
WBsf666444
WBsf666540
WBsf991158
WBsf991159
WBsf1014135
Experimental_infoRNAi_resultWBRNAi00039036Inferred_automaticallyRNAi_primary
WBRNAi00112394Inferred_automaticallyRNAi_primary
WBRNAi00039035Inferred_automaticallyRNAi_primary
WBRNAi00002650Inferred_automaticallyRNAi_primary
WBRNAi00006729Inferred_automaticallyRNAi_primary
WBRNAi00047137Inferred_automaticallyRNAi_primary
WBRNAi00032160Inferred_automaticallyRNAi_primary
WBRNAi00014854Inferred_automaticallyRNAi_primary
Expr_patternExpr10801
Expr1019787
Expr1032451
Expr1151005
Expr2015977
Expr2034212
Drives_constructWBCnstr00017740
WBCnstr00035320
Construct_productWBCnstr00035320
Microarray_results (27)
Expression_clusterWBPaper00032528:L3_depleted
WBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00037682:sma-2_downregulated
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00040560:hpl-2_embryo_downregulated
WBPaper00044037:eat-2_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Gender_Neutral
WBPaper00045861:ash-2(tm1095)_upregulated
WBPaper00045861:set-2(ok952)_upregulated
WBPaper00046509:htz-1(ok3099)_upregulated
WBPaper00046509:lin-35(n745)_upregulated
WBPaper00048988:neuron_expressed
WBPaper00050344:AFD-neuron_enriched
WBPaper00050344:ASER-neuron_enriched
WBPaper00050344:PLM-neuron_enriched
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050859:upregulated_glh-1(gk100)_vs_control_day1-adult
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051265:F1_hrde-1(tm1200)_downregulated
WBPaper00051265:F1_morc-1(tm6048)_downregulated
WBPaper00051558:fog-2(q71)_regulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053289:DREAM-target
WBPaper00053599:mitosis_vs_meiosis_upregulated
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053810:isp-1(qm150)_downregulated
WBPaper00053814:15C_downregulated_OP50
WBPaper00053814:15C_downregulated_PY79
WBPaper00055334:DLC-1_interacting
WBPaper00055354:Rapamycin_upregulated
WBPaper00055565:AVK_enriched
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056090:hpx-2(dg047)_upregulated_E.Coli
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056826:hmc_biased
WBPaper00057288:Cold_upregulated_transcript
WBPaper00057288:iff-1(RNAi)_upregulated_transcript
WBPaper00058948:PA14_downregulated
WBPaper00059027:neuron-synapses_depleted
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059471:EGL-43_interacting
WBPaper00059567:olrn-1(ums9)_regulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060399:pqm-1(ok485)_downregulated_CoCl2_6hr
WBPaper00060459:bcat-1(RNAi)_upregulated
WBPaper00060526:plp-1(ok2155)_upregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00061340:Neuroblast_AWC_SAAVx
WBPaper00061478:pie-1(ne4433)_upregulated
WBPaper00061527:176662_at-Y53F4B.16
WBPaper00061902:camt-1(ok515)_regulated_RMG
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062103:neuron_enriched
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062520:qui-1(db104)_upregulated
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064559:meg-1(vr10)meg-2(RNAi)_upregulated
WBPaper00064728:cpl-1(W32AY35A)_upregulated
WBPaper00065149:lin-52(n771)_upregulated
WBPaper00065158:25C_vs_15C_downregulated_AFD
WBPaper00065158:AFD_enriched
WBPaper00065823:pmk-1(km25)_downregulated
WBPaper00065841:20_0
WBPaper00065841:20_1
WBPaper00065841:20_2
WBPaper00065841:35_1
WBPaper00065841:36_2
WBPaper00065841:54_0
WBPaper00065841:60_0
WBPaper00065841:65_0
WBPaper00065841:73_0
WBPaper00065841:75_0
WBPaper00065841:83_0
WBPaper00065841:93_0
WBPaper00065841:103_0
WBPaper00065841:107_0
WBPaper00065841:108_0
WBPaper00065841:122_0
WBPaper00065841:129_0
WBPaper00065841:137_0
WBPaper00065841:140_0
WBPaper00066038:mip-1(how5)_downregulated
WBPaper00066085:hda-3(ok1991)_downregulated
WBPaper00066085:sin-3(syb2172)_downregulated
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00040858:eQTL_regulated_old
WBPaper00041174:genotypic
WBPaper00041174:genotypic_prime
WBPaper00041609:hpl-1_hpl-2_downregulated
WBPaper00055899:nitroguanidine_regulated
InteractionWBInteraction000520044
WBInteraction000548047
Map_infoMapIIIPosition-26.0124Error0.026073
PositivePositive_cloneF42G9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4612
5047
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00042242
WBPaper00042472
WBPaper00055090
WBPaper00061401
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene