WormBase Tree Display for Gene: WBGene00003735
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WBGene00003735 | SMap | S_parent | Sequence | Y18D10A | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | nhx | ||||||
Allele (184) | |||||||
Strain | WBStrain00002334 | ||||||
WBStrain00002723 | |||||||
WBStrain00031483 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (21) | |||||||
Ortholog (34) | |||||||
Paralog | WBGene00003729 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
WBGene00003730 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00003731 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00003732 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00003733 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00003734 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00003736 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00003943 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
Structured_description | Concise_description | nhx-8 encodes two isoforms of a sodium/proton exchanger expressed intracellularly within hypodermal seam cells, pharyngeal muscles, pharyngeal-intestinal and intestinal-rectal valve cells, and vulval cells; nhx-8 has no obvious phenotype in mass RNAi screens; NHX-8 is thought to prevent intracellular acidification by catalysing the electroneutral exchange of vesicular sodium for an intracellular proton. | Paper_evidence | WBPaper00004402 | |||
WBPaper00005421 | |||||||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to enable potassium:proton antiporter activity and sodium:proton antiporter activity. Predicted to be involved in potassium ion transmembrane transport and regulation of intracellular pH. Predicted to be located in membrane. Expressed in several structures, including hypodermis; pharyngeal muscle cell; pharyngeal-intestinal valve; rectal valve cell; and vulva. Is an ortholog of human SLC9A8 (solute carrier family 9 member A8). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y18D10A.6a | |||||
Y18D10A.6b | |||||||
Corresponding_CDS_history | Y18D10A.6:wp80 | ||||||
Corresponding_transcript | Y18D10A.6a.1 | ||||||
Y18D10A.6b.1 | |||||||
Other_sequence (44) | |||||||
Associated_feature | WBsf643780 | ||||||
WBsf656987 | |||||||
WBsf218643 | |||||||
Experimental_info | RNAi_result | WBRNAi00116504 | Inferred_automatically | RNAi_primary | |||
WBRNAi00055620 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00004546 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern (13) | |||||||
Drives_construct | WBCnstr00003003 | ||||||
WBCnstr00003255 | |||||||
WBCnstr00004498 | |||||||
WBCnstr00010716 | |||||||
WBCnstr00010727 | |||||||
Construct_product | WBCnstr00010727 | ||||||
Microarray_results (23) | |||||||
Expression_cluster (108) | |||||||
Interaction (32) | |||||||
Map_info | Map | I | Position | 14.1387 | Error | 0.010006 | |
Positive | Positive_clone | Y18D10A | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 4534 | |||||
5086 | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00038491 | ||||||
WBPaper00055090 | |||||||
WBPaper00066025 | |||||||
Remark | Sequence connection from [Nehrke K, Melvin J] | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
nxh-2 nxh-3 nxh-4 nxh-5 nxh-6 nxh-7 nxh-8 nxh-9 published in cgc5421 actually refer to nhx genes | CGC_data_submission | ||||||
Method | Gene |