WormBase Tree Display for Gene: WBGene00003729
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| WBGene00003729 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhx-1 | |||||||
| Sequence_name | B0395.1 | ||||||||
| Molecular_name | B0395.1 | ||||||||
| B0395.1.1 | |||||||||
| CE43178 | |||||||||
| B0395.1.2 | |||||||||
| Other_name | CELE_B0395.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | nhx-1 | ||||||||
| DB_info | Database | AceView | gene | XQ635 | |||||
| WormQTL | gene | WBGene00003729 | |||||||
| WormFlux | gene | WBGene00003729 | |||||||
| NDB | locus_tag | CELE_B0395.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003729|UniProtKB=G5EDH8 | |||||||
| family | PTHR10110 | ||||||||
| NCBI | gene | 181680 | |||||||
| RefSeq | protein | NM_078221.8 | |||||||
| TREEFAM | TREEFAM_ID | TF317212 | |||||||
| TrEMBL | UniProtAcc | G5EDH8 | |||||||
| UniProt_GCRP | UniProtAcc | G5EDH8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhx | ||||||||
| Allele (72) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (18) | |||||||||
| Ortholog (47) | |||||||||
| Paralog | WBGene00003736 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00003733 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003735 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003731 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003943 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003730 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003734 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003732 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | nhx-1 encodes a sodium/proton exchanger expressed intracellularly within hypodermal and muscle cells; NHX-1 is required for embryonic viability, and is thought to prevent intracellular acidification by catalysing the electroneutral exchange of vesicular sodium for an intracellular proton. | Paper_evidence | WBPaper00004651 | |||||
| WBPaper00005421 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable potassium:proton antiporter activity and sodium:proton antiporter activity. Predicted to be involved in potassium ion transmembrane transport; regulation of intracellular pH; and sodium ion import across plasma membrane. Predicted to be located in plasma membrane. Expressed in AIYL; AIYR; hypodermis; intestine; and muscle cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0395.1 | |||||||
| Corresponding_CDS_history | B0395.1:wp80 | ||||||||
| B0395.1:wp196 | |||||||||
| Corresponding_transcript | B0395.1.1 | ||||||||
| B0395.1.2 | |||||||||
| Other_sequence (17) | |||||||||
| Associated_feature | WBsf648838 | ||||||||
| WBsf648839 | |||||||||
| WBsf663673 | |||||||||
| WBsf236825 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00039018 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00024396 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00024397 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027146 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00009746 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001533 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2232 | ||||||||
| Expr2240 | |||||||||
| Expr10075 | |||||||||
| Expr1015368 | |||||||||
| Expr1031741 | |||||||||
| Expr1143180 | |||||||||
| Expr2014253 | |||||||||
| Expr2032493 | |||||||||
| Drives_construct | WBCnstr00010711 | ||||||||
| WBCnstr00010720 | |||||||||
| WBCnstr00015047 | |||||||||
| WBCnstr00035912 | |||||||||
| Construct_product | WBCnstr00010720 | ||||||||
| WBCnstr00035912 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (110) | |||||||||
| Interaction | WBInteraction000134079 | ||||||||
| WBInteraction000362601 | |||||||||
| WBInteraction000410939 | |||||||||
| Map_info | Map | X | Position | 23.335 | Error | 0.165455 | |||
| Positive | Positive_clone | B0395 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005421 | ||||||||
| WBPaper00018859 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Sequence connection from [Nehrke K, Melvin J] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
