WormBase Tree Display for Gene: WBGene00003735
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| WBGene00003735 | SMap | S_parent | Sequence | Y18D10A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhx-8 | |||||||
| Sequence_name | Y18D10A.6 | ||||||||
| Molecular_name | Y18D10A.6a | ||||||||
| Y18D10A.6a.1 | |||||||||
| CE31092 | |||||||||
| Y18D10A.6b | |||||||||
| CE31093 | |||||||||
| Y18D10A.6b.1 | |||||||||
| Other_name | CELE_Y18D10A.6 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | nhx-8 | ||||||||
| DB_info | Database | AceView | gene | 1N425 | |||||
| WormQTL | gene | WBGene00003735 | |||||||
| WormFlux | gene | WBGene00003735 | |||||||
| NDB | locus_tag | CELE_Y18D10A.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003735|UniProtKB=G5EBN7 | |||||||
| family | PTHR10110 | ||||||||
| NCBI | gene | 189474 | |||||||
| RefSeq | protein | NM_001026557.4 | |||||||
| NM_001026558.5 | |||||||||
| TREEFAM | TREEFAM_ID | TF354313 | |||||||
| TrEMBL | UniProtAcc | G5EBN7 | |||||||
| G5EFN1 | |||||||||
| UniProt_GCRP | UniProtAcc | G5EBN7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhx | ||||||||
| Allele (184) | |||||||||
| Strain | WBStrain00002334 | ||||||||
| WBStrain00002723 | |||||||||
| WBStrain00031483 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (21) | |||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00003729 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00003730 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003731 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003732 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003733 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003734 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003736 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003943 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | nhx-8 encodes two isoforms of a sodium/proton exchanger expressed intracellularly within hypodermal seam cells, pharyngeal muscles, pharyngeal-intestinal and intestinal-rectal valve cells, and vulval cells; nhx-8 has no obvious phenotype in mass RNAi screens; NHX-8 is thought to prevent intracellular acidification by catalysing the electroneutral exchange of vesicular sodium for an intracellular proton. | Paper_evidence | WBPaper00004402 | |||||
| WBPaper00005421 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable potassium:proton antiporter activity and sodium:proton antiporter activity. Predicted to be involved in potassium ion transmembrane transport and regulation of intracellular pH. Predicted to be located in membrane. Expressed in several structures, including hypodermis; pharyngeal muscle cell; pharyngeal-intestinal valve; rectal valve cell; and vulva. Is an ortholog of human SLC9A8 (solute carrier family 9 member A8). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y18D10A.6a | |||||||
| Y18D10A.6b | |||||||||
| Corresponding_CDS_history | Y18D10A.6:wp80 | ||||||||
| Corresponding_transcript | Y18D10A.6a.1 | ||||||||
| Y18D10A.6b.1 | |||||||||
| Other_sequence | AF497832 | ||||||||
| JI244876.1 | |||||||||
| CJC08877_1 | |||||||||
| AYC02335_1 | |||||||||
| EX544354.1 | |||||||||
| FG348365.1 | |||||||||
| FG582979.1 | |||||||||
| AE03557 | |||||||||
| FG580408.1 | |||||||||
| JI465344.1 | |||||||||
| JI167825.1 | |||||||||
| Acan_isotig09197 | |||||||||
| JI230930.1 | |||||||||
| Dviv_isotig22995 | |||||||||
| Oden_isotig22340 | |||||||||
| ACC09160_1 | |||||||||
| FG347656.1 | |||||||||
| FG586610.1 | |||||||||
| FG583836.1 | |||||||||
| BMC07716_1 | |||||||||
| EX913412.1 | |||||||||
| HBC05143_1 | |||||||||
| HBC10687_1 | |||||||||
| Dviv_isotig25322 | |||||||||
| EX828511.1 | |||||||||
| EX547277.1 | |||||||||
| FC541132.1 | |||||||||
| Oden_isotig27640 | |||||||||
| BXC02244_1 | |||||||||
| FG350683.1 | |||||||||
| FG352048.1 | |||||||||
| JO470609.1 | |||||||||
| Acan_isotig19982 | |||||||||
| Tcol_isotig17002 | |||||||||
| FG353248.1 | |||||||||
| FG347487.1 | |||||||||
| Tcol_isotig09527 | |||||||||
| JI472643.1 | |||||||||
| ES413502.1 | |||||||||
| FG350851.1 | |||||||||
| FC550275.1 | |||||||||
| JI167548.1 | |||||||||
| Name_isotig04200 | |||||||||
| FG588699.1 | |||||||||
| Associated_feature | WBsf643780 | ||||||||
| WBsf656987 | |||||||||
| WBsf218643 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00116504 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00055620 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004546 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (13) | |||||||||
| Drives_construct | WBCnstr00003003 | ||||||||
| WBCnstr00003255 | |||||||||
| WBCnstr00004498 | |||||||||
| WBCnstr00010716 | |||||||||
| WBCnstr00010727 | |||||||||
| Construct_product | WBCnstr00010727 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (108) | |||||||||
| Interaction (32) | |||||||||
| Map_info | Map | I | Position | 14.1387 | Error | 0.010006 | |||
| Positive | Positive_clone | Y18D10A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4534 | |||||||
| 5086 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00066025 | |||||||||
| Remark | Sequence connection from [Nehrke K, Melvin J] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| nxh-2 nxh-3 nxh-4 nxh-5 nxh-6 nxh-7 nxh-8 nxh-9 published in cgc5421 actually refer to nhx genes | CGC_data_submission | ||||||||
| Method | Gene |
