WormBase Tree Display for Gene: WBGene00001988

WBGene00001988 SMap: S_parent: Sequence: W02B8
  Identity: Version: 1
    Name: CGC_name: hot-3 Person_evidence: WBPerson42
      Sequence_name: W02B8.5
      Molecular_name: W02B8.5
        W02B8.5.1
        CE30356
      Other_name: CELE_W02B8.5 Accession_evidence: NDB BX284602
      Public_name: hot-3
    DB_info: Database: AceView gene 2O220
        WormQTL gene WBGene00001988
        WormFlux gene WBGene00001988
        NDB locus_tag CELE_W02B8.5
        Panther gene CAEEL|WormBase=WBGene00001988|UniProtKB=Q8T3B0
          family PTHR34722
        NCBI gene 175044
        RefSeq protein NM_171050.3
        TREEFAM TREEFAM_ID TF315944
        TrEMBL UniProtAcc Q8T3B0
        UniProt_GCRP UniProtAcc Q8T3B0
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:26 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: hot
    Allele (43)
    RNASeq_FPKM (74)
    GO_annotation: 00084887
      00084888
      00084889
      00084890
    Ortholog (29)
    Paralog: WBGene00001986 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00001987 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00003849 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00001990 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00001989 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00020489 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00044484 Caenorhabditis elegans From_analysis: TreeFam
            Panther
    Structured_description: Automated_description: Predicted to be involved in olfactory behavior and response to odorant. Predicted to be located in axon and neuronal cell body. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: W02B8.5
    Corresponding_transcript: W02B8.5.1
    Other_sequence: Acan_isotig16582
    Associated_feature: WBsf224222
      WBsf224223
  Experimental_info: RNAi_result: WBRNAi00054575 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1013346
      Expr1158121
      Expr2012541
      Expr2030780
    Drives_construct: WBCnstr00036538
    Construct_product: WBCnstr00036538
    Microarray_results (16)
    Expression_cluster: WBPaper00033065:clk-1(qm30)_upregulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_larva_enriched
      WBPaper00037950:all-neurons_larva_SelectivelyEnriched
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_larva_enriched
      WBPaper00037950:glr-1(+)-neurons_larva_SelectivelyEnriched
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00044736:flat_dev_expression
      WBPaper00045390:tunicamycin_downregulated
      WBPaper00045390:ubc-9(RNAi)_downregulated
      WBPaper00048988:neuron_enriched
      WBPaper00048988:neuron_expressed
      WBPaper00049334:CE_intestine_enriched
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053771:up_at_dpy-7(e88)
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055565:AVK_enriched
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00058691:set-2(bn129)_upregulated
      WBPaper00058691:sin-3(tm1276)_upregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059421:daf-3(mgDf90)_downregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059754:E.faecalis_OG1RF_upregulated
      WBPaper00060459:bcat-1(RNAi)_upregulated
      WBPaper00060634:fhod-1(tm2363)_upregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061340:AIA
      WBPaper00061340:AIN
      WBPaper00061340:ASJ
      WBPaper00061340:AVK
      WBPaper00061340:DVC
      WBPaper00061340:PVP
      WBPaper00061340:PVT
      WBPaper00061340:RIA
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061479:ubc-9(ne4833)_upregulated
      WBPaper00061651:AIB_enriched
      WBPaper00061651:I3_enriched
      WBPaper00061651:PQR_enriched
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065841:29_0
      WBPaper00065841:39_2
      WBPaper00065841:39_3
      WBPaper00065841:48_0
      WBPaper00065841:50_0
      WBPaper00065841:58_0
      WBPaper00065841:58_1
      WBPaper00065841:59_0
      WBPaper00065841:74_0
      WBPaper00065841:83_0
      WBPaper00065841:91_0
      WBPaper00065841:94_0
      WBPaper00065841:97_0
      WBPaper00065841:104_0
      WBPaper00065841:107_0
      WBPaper00065841:114_0
      WBPaper00065841:122_0
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00035084:L1_enriched_AIN-2_IP
      WBPaper00035084:L2_enriched_AIN-2_IP
      WBPaper00035084:L3_enriched_AIN-2_IP
      WBPaper00035084:L4_enriched_AIN-2_IP
      WBPaper00042548:miRISC_enriched
      WBPaper00045673:colistin_upregulated
  Map_info: Map: II Position: 21.3963 Error: 0.02153
    Positive: Positive_clone: W02B8 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00004498
  Remark: Sequence connection from K. Jekosch based on [Chou JH, Bergmann CI, Sengupta P]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene