WormBase Tree Display for Gene: WBGene00003849
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| WBGene00003849 | SMap | S_parent | Sequence | T01C4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | odr-2 | Person_evidence | WBPerson42 | |||||
| Sequence_name | T01C4.2 | ||||||||
| Molecular_name | T01C4.2a | ||||||||
| T01C4.2a.1 | |||||||||
| CE28348 | |||||||||
| T01C4.2b | |||||||||
| CE28349 | |||||||||
| T01C4.2c | |||||||||
| CE28350 | |||||||||
| T01C4.2b.1 | |||||||||
| T01C4.2c.1 | |||||||||
| Other_name | CELE_T01C4.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | odr-2 | ||||||||
| DB_info | Database | AceView | gene | 5H593 | |||||
| WormQTL | gene | WBGene00003849 | |||||||
| WormFlux | gene | WBGene00003849 | |||||||
| NDB | locus_tag | CELE_T01C4.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003849|UniProtKB=Q9BMI0 | |||||||
| family | PTHR34722 | ||||||||
| NCBI | gene | 179098 | |||||||
| RefSeq | protein | NM_001028919.5 | |||||||
| NM_001392541.1 | |||||||||
| NM_001028918.4 | |||||||||
| TREEFAM | TREEFAM_ID | TF315944 | |||||||
| TrEMBL | UniProtAcc | G5EEC7 | |||||||
| Q9BMI0 | |||||||||
| Q9BMH9 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9BMI0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | odr | ||||||||
| Allele (147) | |||||||||
| Legacy_information | [Bargmann CI] defective chemotaxis to volatile odorants | ||||||||
| [C.elegansII] n1939 : defective chemotaxis to some volatile odorants. n1939/Df similar. OA2: n2148, n2145. Cloned: encodes predicted ~200 aa protein, GPI-linked. [Bargmann et al. 1993; CX] | |||||||||
| Strain | WBStrain00005240 | ||||||||
| WBStrain00005241 | |||||||||
| WBStrain00027112 | |||||||||
| WBStrain00040012 | |||||||||
| WBStrain00040013 | |||||||||
| WBStrain00040017 | |||||||||
| WBStrain00005222 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (26) | |||||||||
| Paralog | WBGene00001986 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WBGene00001987 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00001988 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00001989 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00001990 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00044484 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00020489 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| Structured_description | Concise_description | odr-2 encodes three isoforms of a predicted membrane-associated protein related to the Ly-6 (leukocyte antigen-6) family of GPI (glycosylated phosphatidylinositol)-linked signaling proteins; ODR-2 activity is required for proper functioning of the AWC olfactory neurons and thus for chemotaxis in response to AWC-sensed odorants; ODR-2 is expressed at high levels in sensory neurons, motor neurons, and interneurons, where it appears to be enriched in axons. | Paper_evidence | WBPaper00004498 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Involved in olfactory behavior and response to odorant. Located in axon; external side of plasma membrane; and neuronal cell body. Expressed in head neurons; sensory neurons; somatic nervous system; tail; and in male. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T01C4.2a | |||||||
| T01C4.2b | |||||||||
| T01C4.2c | |||||||||
| Corresponding_transcript | T01C4.2a.1 | ||||||||
| T01C4.2b.1 | |||||||||
| T01C4.2c.1 | |||||||||
| Other_sequence (15) | |||||||||
| Associated_feature (16) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00017953 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00052103 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035010 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052104 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr810 | ||||||||
| Expr811 | |||||||||
| Expr4348 | |||||||||
| Expr15398 | |||||||||
| Expr1021703 | |||||||||
| Expr1031816 | |||||||||
| Expr1155735 | |||||||||
| Expr2014608 | |||||||||
| Expr2032841 | |||||||||
| Drives_construct (17) | |||||||||
| Construct_product | WBCnstr00011937 | ||||||||
| WBCnstr00013112 | |||||||||
| WBCnstr00035831 | |||||||||
| Microarray_results (38) | |||||||||
| Expression_cluster (200) | |||||||||
| Interaction | WBInteraction000004087 | ||||||||
| WBInteraction000028395 | |||||||||
| WBInteraction000112014 | |||||||||
| WBInteraction000166469 | |||||||||
| WBInteraction000260587 | |||||||||
| WBInteraction000501938 | |||||||||
| WBInteraction000558278 | |||||||||
| WBInteraction000558280 | |||||||||
| WBInteraction000558281 | |||||||||
| Map_info | Map | V | Position | 0.590561 | Error | 0.002974 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | T01C4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| VC5 | |||||||||
| Mapping_data | Multi_point | 2049 | |||||||
| 2050 | |||||||||
| 2051 | |||||||||
| 4303 | |||||||||
| 4911 | |||||||||
| Pos_neg_data | 5974 | ||||||||
| 5978 | |||||||||
| 5981 | |||||||||
| 5975 | |||||||||
| 5977 | |||||||||
| 5980 | |||||||||
| 5982 | |||||||||
| 5973 | |||||||||
| 5976 | |||||||||
| 5979 | |||||||||
| Reference (36) | |||||||||
| Method | Gene |
