WormBase Tree Display for Gene: WBGene00001987

WBGene00001987 SMap: S_parent: Sequence: Y39B6A
  Identity: Version: 2
    Name: CGC_name: hot-2 Person_evidence: WBPerson42
      Sequence_name: Y39B6A.48
      Molecular_name: Y39B6A.48a
        Y39B6A.48a.1
        CE44849
        Y39B6A.48b
        CE45024
        Y39B6A.48b.1
      Other_name: CELE_Y39B6A.48 Accession_evidence: NDB BX284605
      Public_name: hot-2
    DB_info: Database: AceView gene 5T661
        WormQTL gene WBGene00001987
        WormFlux gene WBGene00001987
        NDB locus_tag CELE_Y39B6A.48
        Panther gene CAEEL|WormBase=WBGene00001987|UniProtKB=D5SH00
          family PTHR34722
        NCBI gene 180261
        RefSeq protein NM_001269919.3
            NM_001269917.3
        TREEFAM TREEFAM_ID TF315944
        TrEMBL UniProtAcc D5SH00
            D5SH01
        UniProt_GCRP UniProtAcc D5SH00
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:26 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 28 Apr 2010 10:02:54 WBPerson4025 Event: Acquires_merge: WBGene00012667
      Acquires_merge: WBGene00012667
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: hot
    Allele (521)
    RNASeq_FPKM (74)
    GO_annotation: 00007689
      00007690
      00007691
      00007692
    Ortholog (27)
    Paralog: WBGene00001986 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003849 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00001990 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00001989 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00020489 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00001988 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00044484 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Concise_description: hot-2 encodes a predicted paralog of ODR-2 and contains a Ly-6 domain. Paper_evidence: WBPaper00004498
          Curator_confirmed: WBPerson48
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be involved in olfactory behavior and response to odorant. Predicted to be located in axon and neuronal cell body. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y39B6A.48a
      Y39B6A.48b
    Corresponding_CDS_history: Y39B6A.48:wp127
      Y39B6A.48:wp214
      Y39B6A.48c:wp262
    Corresponding_transcript: Y39B6A.48a.1
      Y39B6A.48b.1
    Other_sequence (26)
    Associated_feature (15)
  Experimental_info: RNAi_result: WBRNAi00056209 Inferred_automatically: RNAi_primary
      WBRNAi00020375 Inferred_automatically: RNAi_primary
      WBRNAi00020377 Inferred_automatically: RNAi_primary
      WBRNAi00056198 Inferred_automatically: RNAi_primary
      WBRNAi00056199 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1029111
      Expr1031156
      Expr1159702
      Expr2012540
      Expr2030779
    Microarray_results (30)
    Expression_cluster (145)
  Map_info: Map: V Position: 20.2116 Error: 0.0015
    Positive: Positive_clone: Y39B6A Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00004498
  Remark: Sequence connection from [Chou JH, Bargmann CI, Sengupta P]
    Sequence connection updated from Y39B6B.dd. [020620 krb]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene