WormBase Tree Display for Gene: WBGene00001989
expand all nodes | collapse all nodes | view schema
| WBGene00001989 | SMap | S_parent | Sequence | T12A2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | hot-4 | Person_evidence | WBPerson42 | |||||
| Sequence_name | T12A2.16 | ||||||||
| Molecular_name | T12A2.16a | ||||||||
| T12A2.16a.1 | |||||||||
| CE30393 | |||||||||
| T12A2.16b | |||||||||
| CE30394 | |||||||||
| T12A2.16b.1 | |||||||||
| T12A2.16b.2 | |||||||||
| Other_name | CELE_T12A2.16 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | hot-4 | ||||||||
| DB_info | Database | AceView | gene | 3H313 | |||||
| WormQTL | gene | WBGene00001989 | |||||||
| WormFlux | gene | WBGene00001989 | |||||||
| NDB | locus_tag | CELE_T12A2.16 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001989|UniProtKB=H2KYW7 | |||||||
| family | PTHR34722 | ||||||||
| NCBI | gene | 175881 | |||||||
| RefSeq | protein | NM_171155.7 | |||||||
| NM_171874.3 | |||||||||
| TREEFAM | TREEFAM_ID | TF315944 | |||||||
| TrEMBL | UniProtAcc | H2KYW7 | |||||||
| Q8T3D0 | |||||||||
| UniProt_GCRP | UniProtAcc | H2KYW7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hot | ||||||||
| Allele (87) | |||||||||
| Strain | WBStrain00002171 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00021954 | ||||||||
| 00021955 | |||||||||
| 00021956 | |||||||||
| 00021957 | |||||||||
| Ortholog (24) | |||||||||
| Paralog | WBGene00001986 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WBGene00001987 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00001988 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00003849 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00001990 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00044484 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00020489 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| Structured_description | Automated_description | Predicted to be involved in olfactory behavior and response to odorant. Predicted to be located in axon and neuronal cell body. Expressed in head and tail. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T12A2.16a | |||||||
| T12A2.16b | |||||||||
| Corresponding_transcript | T12A2.16a.1 | ||||||||
| T12A2.16b.1 | |||||||||
| T12A2.16b.2 | |||||||||
| Other_sequence | CR03737 | ||||||||
| ACC30221_1 | |||||||||
| FC539761.1 | |||||||||
| CRC06492_1 | |||||||||
| Dviv_isotig29746 | |||||||||
| JI179008.1 | |||||||||
| Acan_isotig10904 | |||||||||
| Associated_feature (16) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00053154 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00005029 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00053152 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram334 | ||||||||
| Expr6679 | |||||||||
| Expr1027258 | |||||||||
| Expr1031157 | |||||||||
| Expr1156751 | |||||||||
| Expr2012542 | |||||||||
| Expr2030781 | |||||||||
| Drives_construct | WBCnstr00002925 | ||||||||
| WBCnstr00036537 | |||||||||
| Construct_product | WBCnstr00036537 | ||||||||
| Microarray_results (28) | |||||||||
| Expression_cluster (143) | |||||||||
| Interaction | WBInteraction000553260 | ||||||||
| Map_info | Map | III | Position | -1.40844 | Error | 0.000137 | |||
| Positive | Positive_clone | T12A2 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004498 | ||||||||
| Remark | Sequence connection from [Chou JH, Bargmann CI, Sengupta P] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
