WormBase Tree Display for Gene: WBGene00001989

WBGene00001989 SMap: S_parent: Sequence: T12A2
  Identity: Version: 1
    Name: CGC_name: hot-4 Person_evidence: WBPerson42
      Sequence_name: T12A2.16
      Molecular_name: T12A2.16a
        T12A2.16a.1
        CE30393
        T12A2.16b
        CE30394
        T12A2.16b.1
        T12A2.16b.2
      Other_name: CELE_T12A2.16 Accession_evidence: NDB BX284603
      Public_name: hot-4
    DB_info: Database: AceView gene 3H313
        WormQTL gene WBGene00001989
        WormFlux gene WBGene00001989
        NDB locus_tag CELE_T12A2.16
        Panther gene CAEEL|WormBase=WBGene00001989|UniProtKB=H2KYW7
          family PTHR34722
        NCBI gene 175881
        RefSeq protein NM_171155.7
            NM_171874.3
        TREEFAM TREEFAM_ID TF315944
        TrEMBL UniProtAcc H2KYW7
            Q8T3D0
        UniProt_GCRP UniProtAcc H2KYW7
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:26 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: hot
    Allele (87)
    Strain: WBStrain00002171
    RNASeq_FPKM (74)
    GO_annotation: 00021954
      00021955
      00021956
      00021957
    Ortholog: WBGene00042132 Caenorhabditis briggsae From_analysis: OrthoMCL
            WormBase-Compara
      WBGene00078051 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00225996 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g5107 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g4796 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g6024 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g19654 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g14928 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g21855 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g4328 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g12906 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g8719 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g11276 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Csp11.Scaffold596.g5259 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01268.g19712 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_08868 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_010780 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g11673 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g10324 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30169900 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g7884 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00245462 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00305198 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00259248 Strongyloides ratti From_analysis: WormBase-Compara
    Paralog: WBGene00001986 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00001987 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00001988 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00003849 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00001990 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00044484 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00020489 Caenorhabditis elegans From_analysis: TreeFam
            Panther
    Structured_description: Automated_description: Predicted to be involved in olfactory behavior and response to odorant. Predicted to be located in axon and neuronal cell body. Expressed in head and tail. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T12A2.16a
      T12A2.16b
    Corresponding_transcript: T12A2.16a.1
      T12A2.16b.1
      T12A2.16b.2
    Other_sequence: CR03737
      ACC30221_1
      FC539761.1
      CRC06492_1
      Dviv_isotig29746
      JI179008.1
      Acan_isotig10904
    Associated_feature (16)
  Experimental_info: RNAi_result: WBRNAi00053154 Inferred_automatically: RNAi_primary
      WBRNAi00005029 Inferred_automatically: RNAi_primary
      WBRNAi00053152 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram334
      Expr6679
      Expr1027258
      Expr1031157
      Expr1156751
      Expr2012542
      Expr2030781
    Drives_construct: WBCnstr00002925
      WBCnstr00036537
    Construct_product: WBCnstr00036537
    Microarray_results (28)
    Expression_cluster (143)
    Interaction: WBInteraction000553260
  Map_info: Map: III Position: -1.40844 Error: 0.000137
    Positive: Positive_clone: T12A2 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00004498
  Remark: Sequence connection from [Chou JH, Bargmann CI, Sengupta P]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene