WormBase Tree Display for Gene: WBGene00000529
expand all nodes | collapse all nodes | view schema
| WBGene00000529 | SMap | S_parent | Sequence | CHROMOSOME_II | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | clh-2 | |||||||
| Sequence_name | B0491.8 | ||||||||
| Molecular_name | B0491.8a | ||||||||
| B0491.8a.1 | |||||||||
| CE53983 | |||||||||
| B0491.8b | |||||||||
| CE27790 | |||||||||
| B0491.8c | |||||||||
| CE02153 | |||||||||
| B0491.8b.1 | |||||||||
| B0491.8c.1 | |||||||||
| Other_name | ceclc-2 | Accession_evidence | EMBL | AF173171 | |||||
| clc-2 | |||||||||
| CELE_B0491.8 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | clh-2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clh | ||||||||
| Allele (279) | |||||||||
| Strain | WBStrain00031534 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (45) | |||||||||
| Paralog | WBGene00000528 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000530 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000531 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000532 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000533 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | clh-2 encodes a chloride channel protein that is required for embryonic viability; may have two transcripts transcribed from alternative promoters, and the two transcripts might be expressed in different cell types. | Paper_evidence | WBPaper00003797 | |||||
| WBPaper00004423 | |||||||||
| WBPaper00004651 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable voltage-gated chloride channel activity. Predicted to be involved in chloride transport. Predicted to be located in plasma membrane. Expressed in several structures, including ganglia; intestine; pharyngeal-intestinal valve; somatic nervous system; and vulval muscle. Human ortholog(s) of this gene implicated in Thomsen disease; idiopathic generalized epilepsy 11; and primary hyperaldosteronism. Is an ortholog of human CLCN1 (chloride voltage-gated channel 1) and CLCN2 (chloride voltage-gated channel 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:446 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2020) | ||||
| DOID:0081336 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2019) | ||||||
| DOID:2106 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2019) | ||||||
| DOID:0111312 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2020) | ||||||
| Molecular_info | Corresponding_CDS | B0491.8a | |||||||
| B0491.8b | |||||||||
| B0491.8c | |||||||||
| Corresponding_CDS_history | B0491.8a:wp274 | ||||||||
| Corresponding_transcript | B0491.8a.1 | ||||||||
| B0491.8b.1 | |||||||||
| B0491.8c.1 | |||||||||
| Other_sequence (26) | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00011514 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00000398 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00077547 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00039107 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00009806 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00039106 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1122 | ||||||||
| Expr1123 | |||||||||
| Expr1188 | |||||||||
| Expr1024352 | |||||||||
| Expr1030316 | |||||||||
| Expr1143264 | |||||||||
| Expr2010229 | |||||||||
| Expr2028471 | |||||||||
| Drives_construct | WBCnstr00010090 | ||||||||
| WBCnstr00010091 | |||||||||
| WBCnstr00010139 | |||||||||
| WBCnstr00037470 | |||||||||
| Construct_product | WBCnstr00037470 | ||||||||
| Microarray_results (36) | |||||||||
| Expression_cluster (154) | |||||||||
| Interaction | WBInteraction000133971 | ||||||||
| WBInteraction000133972 | |||||||||
| WBInteraction000135502 | |||||||||
| WBInteraction000135503 | |||||||||
| WBInteraction000138010 | |||||||||
| Map_info | Map | II | Position | 3.45766 | Error | 0.002945 | |||
| Positive | Positive_clone | B0491 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | sequence connection from [George AL] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
