WormBase Tree Display for Gene: WBGene00000531
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| WBGene00000531 | SMap | S_parent | Sequence | T06F4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | clh-4 | |||||||
| Sequence_name | T06F4.2 | ||||||||
| Molecular_name | T06F4.2a | ||||||||
| T06F4.2a.1 | |||||||||
| CE38544 | |||||||||
| T06F4.2b | |||||||||
| CE28648 | |||||||||
| T06F4.2b.1 | |||||||||
| Other_name | T06F4.a | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| T06F4.b | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_T06F4.2 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | clh-4 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clh | ||||||||
| Allele (98) | |||||||||
| Strain | WBStrain00031843 | ||||||||
| WBStrain00037721 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00000528 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000529 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000530 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000532 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00000533 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable voltage-gated chloride channel activity. Predicted to be involved in chloride transport. Predicted to be located in plasma membrane. Expressed in excretory cell. Human ortholog(s) of this gene implicated in Thomsen disease; idiopathic generalized epilepsy 11; and primary hyperaldosteronism. Is an ortholog of human CLCN1 (chloride voltage-gated channel 1) and CLCN2 (chloride voltage-gated channel 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:446 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2020) | ||||
| DOID:0081336 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2019) | ||||||
| DOID:2106 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2019) | ||||||
| DOID:0111312 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2020) | ||||||
| Molecular_info | Corresponding_CDS | T06F4.2a | |||||||
| T06F4.2b | |||||||||
| Corresponding_CDS_history | T06F4.2a:wp142 | ||||||||
| Corresponding_transcript | T06F4.2a.1 | ||||||||
| T06F4.2b.1 | |||||||||
| Other_sequence | JI171877.1 | ||||||||
| JI223678.1 | |||||||||
| Dviv_isotig25055 | |||||||||
| Tcol_isotig11995 | |||||||||
| Tcol_isotig11996 | |||||||||
| HG08696 | |||||||||
| Acan_isotig12058 | |||||||||
| Oden_isotig24653 | |||||||||
| Tcol_isotig18311 | |||||||||
| HGC03609_1 | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00035277 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00018319 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052678 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00077548 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1125 | ||||||||
| Expr1190 | |||||||||
| Expr1010424 | |||||||||
| Expr1156283 | |||||||||
| Expr2010231 | |||||||||
| Expr2028473 | |||||||||
| Drives_construct | WBCnstr00005887 | ||||||||
| WBCnstr00007706 | |||||||||
| WBCnstr00010093 | |||||||||
| WBCnstr00010142 | |||||||||
| WBCnstr00037469 | |||||||||
| Construct_product | WBCnstr00037469 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (96) | |||||||||
| Interaction (42) | |||||||||
| Map_info | Map | X | Position | -8.50461 | Error | 0.115815 | |||
| Positive | Positive_clone | T06F4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5017 | |||||||
| Pseudo_map_position | |||||||||
| Reference (15) | |||||||||
| Remark | sequence connection from [George AL] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
