WormBase Tree Display for Gene: WBGene00000529
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WBGene00000529 | SMap | S_parent | Sequence | CHROMOSOME_II | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | clh-2 | |||||||
Sequence_name | B0491.8 | ||||||||
Molecular_name | B0491.8a | ||||||||
B0491.8a.1 | |||||||||
CE53983 | |||||||||
B0491.8b | |||||||||
CE27790 | |||||||||
B0491.8c | |||||||||
CE02153 | |||||||||
B0491.8b.1 | |||||||||
B0491.8c.1 | |||||||||
Other_name | ceclc-2 | Accession_evidence | EMBL | AF173171 | |||||
clc-2 | |||||||||
CELE_B0491.8 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | clh-2 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | clh | ||||||||
Allele (279) | |||||||||
Strain | WBStrain00031534 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (12) | |||||||||
Ortholog (45) | |||||||||
Paralog | WBGene00000528 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00000530 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00000531 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00000532 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00000533 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | clh-2 encodes a chloride channel protein that is required for embryonic viability; may have two transcripts transcribed from alternative promoters, and the two transcripts might be expressed in different cell types. | Paper_evidence | WBPaper00003797 | |||||
WBPaper00004423 | |||||||||
WBPaper00004651 | |||||||||
Curator_confirmed | WBPerson48 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable voltage-gated chloride channel activity. Predicted to be involved in chloride transport. Predicted to be located in plasma membrane. Expressed in several structures, including ganglia; intestine; pharyngeal-intestinal valve; somatic nervous system; and vulval muscle. Human ortholog(s) of this gene implicated in Thomsen disease; idiopathic generalized epilepsy 11; and primary hyperaldosteronism. Is an ortholog of human CLCN1 (chloride voltage-gated channel 1) and CLCN2 (chloride voltage-gated channel 2). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:446 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2020) | ||||
DOID:0081336 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2019) | ||||||
DOID:2106 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2019) | ||||||
DOID:0111312 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2020) | ||||||
Molecular_info | Corresponding_CDS | B0491.8a | |||||||
B0491.8b | |||||||||
B0491.8c | |||||||||
Corresponding_CDS_history | B0491.8a:wp274 | ||||||||
Corresponding_transcript | B0491.8a.1 | ||||||||
B0491.8b.1 | |||||||||
B0491.8c.1 | |||||||||
Other_sequence (26) | |||||||||
Associated_feature (12) | |||||||||
Experimental_info | RNAi_result | WBRNAi00011514 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00000398 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00077547 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00039107 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00009806 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00039106 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1122 | ||||||||
Expr1123 | |||||||||
Expr1188 | |||||||||
Expr1024352 | |||||||||
Expr1030316 | |||||||||
Expr1143264 | |||||||||
Expr2010229 | |||||||||
Expr2028471 | |||||||||
Drives_construct | WBCnstr00010090 | ||||||||
WBCnstr00010091 | |||||||||
WBCnstr00010139 | |||||||||
WBCnstr00037470 | |||||||||
Construct_product | WBCnstr00037470 | ||||||||
Microarray_results (36) | |||||||||
Expression_cluster (154) | |||||||||
Interaction | WBInteraction000133971 | ||||||||
WBInteraction000133972 | |||||||||
WBInteraction000135502 | |||||||||
WBInteraction000135503 | |||||||||
WBInteraction000138010 | |||||||||
Map_info | Map | II | Position | 3.45766 | Error | 0.002945 | |||
Positive | Positive_clone | B0491 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (11) | |||||||||
Remark (2) | |||||||||
Method | Gene |