WormBase Tree Display for Gene: WBGene00000379
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| WBGene00000379 | SMap | S_parent | Sequence | K01C8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | cct-4 | Person_evidence | WBPerson89 | |||||
| Sequence_name | K01C8.10 | ||||||||
| Molecular_name | K01C8.10 | ||||||||
| K01C8.10.1 | |||||||||
| CE02262 | |||||||||
| K01C8.10.2 | |||||||||
| Other_name | CELE_K01C8.10 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | cct-4 | ||||||||
| DB_info | Database | AceView | gene | 2I575 | |||||
| WormQTL | gene | WBGene00000379 | |||||||
| WormFlux | gene | WBGene00000379 | |||||||
| NDB | locus_tag | CELE_K01C8.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000379|UniProtKB=P47208 | |||||||
| family | PTHR11353 | ||||||||
| NCBI | gene | 174330 | |||||||
| RefSeq | protein | NM_063349.9 | |||||||
| SwissProt | UniProtAcc | P47208 | |||||||
| TREEFAM | TREEFAM_ID | TF106332 | |||||||
| UniProt_GCRP | UniProtAcc | P47208 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cct | ||||||||
| Allele (27) | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes one of 7-9 related subunits of eukaryotic cytosolic chaperonin CCT.Ortholog of mouse Cctd (63% aa sequence identity)[PC] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00000377 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00000378 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000380 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000381 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00020391 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021934 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018782 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00002025 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004089 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | cct-4 encodes a putative delta subunit of the eukaryotic cytosolic ('T complex') chaperonin, orthologous to human CCT4 (OMIM:605142); CCT-4 represses SKN-1-dependent transcription of gst-4; CCT-4 is expressed in pharynx, pharyngeal gland cells, intestine, renal gland cells, and neurons; CCT-4 is expressed in touch receptor neurons in a MEC-3-dependent fashion. | Paper_evidence | WBPaper00002338 | |||||
| WBPaper00005356 | |||||||||
| WBPaper00005654 | |||||||||
| WBPaper00006525 | |||||||||
| WBPaper00025088 | |||||||||
| WBPaper00026640 | |||||||||
| WBPaper00030965 | |||||||||
| WBPaper00031006 | |||||||||
| WBPaper00031362 | |||||||||
| WBPaper00031363 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 14 Jan 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable unfolded protein binding activity. Involved in post-embryonic body morphogenesis. Predicted to be located in cytoplasm. Predicted to be part of chaperonin-containing T-complex. Expressed in body wall musculature; head; hypodermis; tail; and touch receptor neurons. Is an ortholog of human CCT4 (chaperonin containing TCP1 subunit 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K01C8.10 | |||||||
| Corresponding_transcript | K01C8.10.1 | ||||||||
| K01C8.10.2 | |||||||||
| Other_sequence (198) | |||||||||
| Associated_feature | WBsf644458 | ||||||||
| WBsf657957 | |||||||||
| WBsf988689 | |||||||||
| WBsf988690 | |||||||||
| WBsf1012665 | |||||||||
| WBsf1012666 | |||||||||
| WBsf1012667 | |||||||||
| WBsf221730 | |||||||||
| WBsf221731 | |||||||||
| WBsf221732 | |||||||||
| Experimental_info | RNAi_result (26) | ||||||||
| Expr_pattern | Chronogram791 | ||||||||
| Expr6301 | |||||||||
| Expr11644 | |||||||||
| Expr16389 | |||||||||
| Expr16390 | |||||||||
| Expr1011515 | |||||||||
| Expr1030205 | |||||||||
| Expr1153334 | |||||||||
| Expr2009772 | |||||||||
| Expr2028012 | |||||||||
| Drives_construct | WBCnstr00003176 | ||||||||
| WBCnstr00009237 | |||||||||
| WBCnstr00009238 | |||||||||
| WBCnstr00037584 | |||||||||
| WBCnstr00042990 | |||||||||
| Construct_product | WBCnstr00009237 | ||||||||
| WBCnstr00037584 | |||||||||
| WBCnstr00042991 | |||||||||
| WBCnstr00042992 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (171) | |||||||||
| Interaction (138) | |||||||||
| Map_info | Map | II | Position | 0.758957 | Error | 0.000296 | |||
| Positive | Positive_clone | K01C8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (22) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
