WormBase Tree Display for Gene: WBGene00000379

WBGene00000379 SMap: S_parent: Sequence: K01C8
  Identity: Version: 1
    Name: CGC_name: cct-4 Person_evidence: WBPerson89
      Sequence_name: K01C8.10
      Molecular_name: K01C8.10
        K01C8.10.1
        CE02262
        K01C8.10.2
      Other_name: CELE_K01C8.10 Accession_evidence: NDB BX284602
      Public_name: cct-4
    DB_info: Database: AceView gene 2I575
        WormQTL gene WBGene00000379
        WormFlux gene WBGene00000379
        NDB locus_tag CELE_K01C8.10
        Panther gene CAEEL|WormBase=WBGene00000379|UniProtKB=P47208
          family PTHR11353
        NCBI gene 174330
        RefSeq protein NM_063349.9
        SwissProt UniProtAcc P47208
        TREEFAM TREEFAM_ID TF106332
        UniProt_GCRP UniProtAcc P47208
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:20 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cct
    Allele (27)
    Legacy_information: [C.elegansII] NMK. Encodes one of 7-9 related subunits of eukaryotic cytosolic chaperonin CCT.Ortholog of mouse Cctd (63% aa sequence identity)[PC]
    RNASeq_FPKM (74)
    GO_annotation (15)
    Ortholog (37)
    Paralog: WBGene00000377 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00000378 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00000380 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00000381 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00020391 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00021934 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00018782 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00002025 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00004089 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: cct-4 encodes a putative delta subunit of the eukaryotic cytosolic ('T complex') chaperonin, orthologous to human CCT4 (OMIM:605142); CCT-4 represses SKN-1-dependent transcription of gst-4; CCT-4 is expressed in pharynx, pharyngeal gland cells, intestine, renal gland cells, and neurons; CCT-4 is expressed in touch receptor neurons in a MEC-3-dependent fashion. Paper_evidence: WBPaper00002338
            WBPaper00005356
            WBPaper00005654
            WBPaper00006525
            WBPaper00025088
            WBPaper00026640
            WBPaper00030965
            WBPaper00031006
            WBPaper00031362
            WBPaper00031363
          Curator_confirmed: WBPerson48
            WBPerson567
          Date_last_updated: 14 Jan 2008 00:00:00
      Automated_description: Predicted to enable unfolded protein binding activity. Involved in post-embryonic body morphogenesis. Predicted to be located in cytoplasm. Predicted to be part of chaperonin-containing T-complex. Expressed in body wall musculature; head; hypodermis; tail; and touch receptor neurons. Is an ortholog of human CCT4 (chaperonin containing TCP1 subunit 4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: K01C8.10
    Corresponding_transcript: K01C8.10.1
      K01C8.10.2
    Other_sequence (198)
    Associated_feature: WBsf644458
      WBsf657957
      WBsf988689
      WBsf988690
      WBsf1012665
      WBsf1012666
      WBsf1012667
      WBsf221730
      WBsf221731
      WBsf221732
  Experimental_info: RNAi_result (26)
    Expr_pattern: Chronogram791
      Expr6301
      Expr11644
      Expr16389
      Expr16390
      Expr1011515
      Expr1030205
      Expr1153334
      Expr2009772
      Expr2028012
    Drives_construct: WBCnstr00003176
      WBCnstr00009237
      WBCnstr00009238
      WBCnstr00037584
      WBCnstr00042990
    Construct_product: WBCnstr00009237
      WBCnstr00037584
      WBCnstr00042991
      WBCnstr00042992
    Microarray_results (20)
    Expression_cluster (171)
    Interaction: WBInteraction000005751
      WBInteraction000034907
      WBInteraction000035176
      WBInteraction000035364
      WBInteraction000038237
      WBInteraction000040112
      WBInteraction000040226
      WBInteraction000040227
      WBInteraction000042112
      WBInteraction000043759
      WBInteraction000046903
      WBInteraction000047160
      WBInteraction000048607
      WBInteraction000048698
      WBInteraction000049314
      WBInteraction000102692
      WBInteraction000103099
      WBInteraction000103562
      WBInteraction000103692
      WBInteraction000104370
      WBInteraction000106575
      WBInteraction000110802
      WBInteraction000110937
      WBInteraction000111285
      WBInteraction000114390
      WBInteraction000158937
      WBInteraction000169079
      WBInteraction000169080
      WBInteraction000169081
      WBInteraction000169082
      WBInteraction000170583
      WBInteraction000179054
      WBInteraction000196858
      WBInteraction000196859
      WBInteraction000208592
      WBInteraction000208865
      WBInteraction000209935
      WBInteraction000212321
      WBInteraction000213292
      WBInteraction000214862
      WBInteraction000215334
      WBInteraction000223864
      WBInteraction000235401
      WBInteraction000242884
      WBInteraction000243398
      WBInteraction000243926
      WBInteraction000252086
      WBInteraction000258808
      WBInteraction000260031
      WBInteraction000274472
      WBInteraction000283174
      WBInteraction000283425
      WBInteraction000283506
      WBInteraction000284778
      WBInteraction000284956
      WBInteraction000288901
      WBInteraction000304780
      WBInteraction000311653
      WBInteraction000311668
      WBInteraction000317668
      WBInteraction000331515
      WBInteraction000332024
      WBInteraction000339655
      WBInteraction000345946
      WBInteraction000347226
      WBInteraction000347546
      WBInteraction000347726
      WBInteraction000365601
      WBInteraction000372866
      WBInteraction000386844
      WBInteraction000395280
      WBInteraction000396575
      WBInteraction000397082
      WBInteraction000404667
      WBInteraction000404919
      WBInteraction000405182
      WBInteraction000405237
      WBInteraction000405262
      WBInteraction000410115
      WBInteraction000410486
      WBInteraction000417563
      WBInteraction000424024
      WBInteraction000425612
      WBInteraction000428250
      WBInteraction000430837
      WBInteraction000430930
      WBInteraction000432822
      WBInteraction000432823
      WBInteraction000433514
      WBInteraction000434388
      WBInteraction000434808
      WBInteraction000452841
      WBInteraction000454507
      WBInteraction000455727
      WBInteraction000456570
      WBInteraction000456675
      WBInteraction000458206
      WBInteraction000458897
      WBInteraction000458921
      WBInteraction000463272
      WBInteraction000467160
      WBInteraction000472431
      WBInteraction000473141
      WBInteraction000473526
      WBInteraction000474567
      WBInteraction000474727
      WBInteraction000502438
      WBInteraction000503993
      WBInteraction000522862
      WBInteraction000536884
      WBInteraction000536938
      WBInteraction000536989
      WBInteraction000537043
      WBInteraction000540931
      WBInteraction000542073
      WBInteraction000542531
      WBInteraction000548369
      WBInteraction000551407
      WBInteraction000553132
      WBInteraction000554148
      WBInteraction000558892
      WBInteraction000559959
      WBInteraction000561426
      WBInteraction000562706
      WBInteraction000562932
      WBInteraction000564804
      WBInteraction000565691
      WBInteraction000566102
      WBInteraction000566224
      WBInteraction000566503
      WBInteraction000567528
      WBInteraction000568575
      WBInteraction000571851
      WBInteraction000573365
      WBInteraction000574678
      WBInteraction000575729
      WBInteraction000576092
      WBInteraction000581352
  Map_info: Map: II Position: 0.758957 Error: 0.000296
    Positive: Positive_clone: K01C8 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (22)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene