WormBase Tree Display for Gene: WBGene00000379

WBGene00000379 SMap: S_parent: Sequence: K01C8
  Identity: Version: 1
    Name: CGC_name: cct-4 Person_evidence: WBPerson89
      Sequence_name: K01C8.10
      Molecular_name: K01C8.10
        K01C8.10.1
        CE02262
        K01C8.10.2
      Other_name: CELE_K01C8.10 Accession_evidence: NDB BX284602
      Public_name: cct-4
    DB_info: Database: AceView gene 2I575
        WormQTL gene WBGene00000379
        WormFlux gene WBGene00000379
        NDB locus_tag CELE_K01C8.10
        Panther gene CAEEL|WormBase=WBGene00000379|UniProtKB=P47208
          family PTHR11353
        NCBI gene 174330
        RefSeq protein NM_063349.9
        SwissProt UniProtAcc P47208
        TREEFAM TREEFAM_ID TF106332
        UniProt_GCRP UniProtAcc P47208
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:20 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cct
    Allele (27)
    Legacy_information: [C.elegansII] NMK. Encodes one of 7-9 related subunits of eukaryotic cytosolic chaperonin CCT.Ortholog of mouse Cctd (63% aa sequence identity)[PC]
    RNASeq_FPKM (74)
    GO_annotation (15)
    Ortholog (37)
    Paralog: WBGene00000377 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00000378 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00000380 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00000381 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00020391 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00021934 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00018782 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00002025 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00004089 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: cct-4 encodes a putative delta subunit of the eukaryotic cytosolic ('T complex') chaperonin, orthologous to human CCT4 (OMIM:605142); CCT-4 represses SKN-1-dependent transcription of gst-4; CCT-4 is expressed in pharynx, pharyngeal gland cells, intestine, renal gland cells, and neurons; CCT-4 is expressed in touch receptor neurons in a MEC-3-dependent fashion. Paper_evidence: WBPaper00002338
            WBPaper00005356
            WBPaper00005654
            WBPaper00006525
            WBPaper00025088
            WBPaper00026640
            WBPaper00030965
            WBPaper00031006
            WBPaper00031362
            WBPaper00031363
          Curator_confirmed: WBPerson48
            WBPerson567
          Date_last_updated: 14 Jan 2008 00:00:00
      Automated_description: Predicted to enable unfolded protein binding activity. Involved in post-embryonic body morphogenesis. Predicted to be located in cytoplasm. Predicted to be part of chaperonin-containing T-complex. Expressed in body wall musculature; head; hypodermis; tail; and touch receptor neurons. Is an ortholog of human CCT4 (chaperonin containing TCP1 subunit 4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: K01C8.10
    Corresponding_transcript: K01C8.10.1
      K01C8.10.2
    Other_sequence: U25697
      MHC00323_1
      FC811520.1
      HGC00335_1
      DN153147.1
      GR978029.1
      FK804905.1
      CGC00847_1
      FC819114.1
      MPC00281_1
      Oden_isotig00988
      HGC06512_1
      HG02826
      FK808901.1
      FC544022.1
      FK807376.1
      AA080849.1
      FC813316.1
      EX562877.1
      Oden_isotig00992
      HGC00840_1
      ACC09454_1
      GRC04258_2
      GR17256
      Acan_isotig00263
      SS00380
      MIC00998_1
      Oden_isotig00990
      BU088323.1
      FG971537.1
      EX563984.1
      AYC01709_1
      RS06240
      PT02459
      FC550134.1
      CSC02011_1
      FG977907.1
      HG04544
      EW742031.1
      TVC01463_1
      ES566180.1
      Oden_isotig01000
      Acan_isotig00256
      AE00168
      GR19756
      FC810513.1
      FC546522.1
      MP01161
      JK316007.1
      HG06274
      MJC01091_1
      XIC03922_1
      FK804934.1
      FC554866.1
      HG10879
      SRC01552_1
      Acan_isotig00261
      FK806367.1
      FK807647.1
      EX010822.1
      EX007230.1
      GO252501.1
      EX564640.1
      ACC09454_2
      WBC00077_1
      TV00618
      HBC01619_1
      Tcir_isotig20699
      Acan_isotig00264
      SR03824
      Oden_isotig00998
      JI167619.1
      PT00468
      EX910988.1
      NBC00838_1
      Dviv_isotig22464
      FC815937.1
      Oden_isotig00989
      MPC01061_1
      Acan_isotig00260
      BU087712.1
      MJ03985
      Acan_isotig10824
      EX545803.1
      EX013062.1
      Acan_isotig00259
      Oden_isotig00999
      PT02186
      EY467239.1
      MP01315
      AYC01709_2
      FC820384.1
      SSC02766_1
      FC814331.1
      GRC04258_1
      MH02301
      GR19755
      RSC01903_1
      TV01589
      FG971144.1
      Oden_isotig00994
      CJC12091_1
      MH08112
      HBC04045_1
      AE00710
      ES739014.1
      GPC02827_1
      ACC30779_1
      HG09754
      NAC01863_1
      EX910229.1
      DA05085
      PPC01323_1
      BU088477.1
      ES565337.1
      EY472593.1
      ACC30312_1
      HBC00317_1
      Oden_isotig01001
      Hbac_isotig01191
      FK805450.1
      GP02174
      HG03380
      TVC00453_1
      GO249966.1
      DAC01993_1
      Oden_isotig00987
      SSC05872_1
      CJC02770_1
      FK802950.1
      EX541804.1
      EX912131.1
      MI00618
      JO474353.1
      EX566549.1
      Oden_isotig00996
      Oden_isotig00991
      CGC00285_1
      PP00251
      TSC10482_1
      Oden_isotig24783
      JI475365.1
      FK806340.1
      FD514485.1
      MH01906
      SSC03046_1
      FK799831.1
      EY467195.1
      FC819567.1
      HG11216
      CR00791
      EX914932.1
      GR17257
      XI05373
      GP02366
      SR00184
      BUC01882_1
      FG981123.1
      PTC01962_1
      HGC09462_1
      Dviv_isotig31359
      FC817066.1
      CBC02000_1
      EY472547.1
      Oden_isotig01003
      AE00566
      ACC23402_1
      Name_isotig02239
      SS02193
      FC813691.1
      Tcol_isotig09833
      PPC09147_1
      MJC03111_1
      Acan_isotig00258
      CRC00132_1
      Oden_isotig00995
      MH03243
      ACC21283_1
      Oden_isotig01002
      Acan_isotig00257
      PTC01597_1
      Oden_isotig00993
      MJ02108
      Oden_isotig00997
      EX552034.1
      Acan_isotig00262
      EX008387.1
      GPC03259_1
      SR03159
      NB08473
      Tcir_isotig08133
      SC00332
      FK809112.1
      FG580385.1
      FK803494.1
      CBC17498_1
      Oden_isotig01004
      EW742336.1
    Associated_feature: WBsf644458
      WBsf657957
      WBsf988689
      WBsf988690
      WBsf1012665
      WBsf1012666
      WBsf1012667
      WBsf221730
      WBsf221731
      WBsf221732
  Experimental_info: RNAi_result (26)
    Expr_pattern: Chronogram791
      Expr6301
      Expr11644
      Expr16389
      Expr16390
      Expr1011515
      Expr1030205
      Expr1153334
      Expr2009772
      Expr2028012
    Drives_construct: WBCnstr00003176
      WBCnstr00009237
      WBCnstr00009238
      WBCnstr00037584
      WBCnstr00042990
    Construct_product: WBCnstr00009237
      WBCnstr00037584
      WBCnstr00042991
      WBCnstr00042992
    Microarray_results (20)
    Expression_cluster (171)
    Interaction (138)
  Map_info: Map: II Position: 0.758957 Error: 0.000296
    Positive: Positive_clone: K01C8 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (22)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene