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WormBase Tree Display for Gene: WBGene00000002

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Name Class

WBGene00000002EvidenceAuthor_evidenceVeljkovic E
Verrey F
SMapS_parentSequenceF27C8
IdentityVersion1
NameCGC_nameaat-1
Sequence_nameF27C8.1
Molecular_nameF27C8.1
F27C8.1.1
CE03266
Other_nameCELE_F27C8.1Accession_evidenceNDBBX284604
Public_nameaat-1
DB_infoDatabaseAceViewgene4K364
WormQTLgeneWBGene00000002
WormFluxgeneWBGene00000002
NDBlocus_tagCELE_F27C8.1
PanthergeneCAEEL|WormBase=WBGene00000002|UniProtKB=Q19834
familyPTHR11785
NCBIgene177793
RefSeqproteinNM_069306.7
TrEMBLUniProtAccQ19834
UniProt_GCRPUniProtAccQ19834
OMIMgene603593
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:19WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classaat
Allele (38)
StrainWBStrain00054846
RNASeq_FPKM (74)
GO_annotation (11)
OrthologWBGene00072228Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00039142Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00149684Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00155266Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00128643Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00216201Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00110222Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00223909Brugia malayiFrom_analysisWormBase-Compara
WBGene00269017Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g8641Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g7466Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g19943Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g21159Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g8095Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g7945Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g14541Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g993Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g13014Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g24984Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g25928Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g22231Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_17799.g25802Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_IV.g13239Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g8220Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00186.g6569Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_11900Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_013471Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g05703Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g13204Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40340700Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g11359Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00242584Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00268061Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00297255Trichuris murisFrom_analysisWormBase-Compara
WBGene00299376Trichuris murisFrom_analysisWormBase-Compara
SGD:S000003287Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoInspector
Panther
PhylomeDB
SonicParanoid
SGD:S000001028Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0039844Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-000607-21Danio rerioFrom_analysisEnsEMBL-Compara
OMA
OrthoInspector
ZFIN:ZDB-GENE-121105-2Danio rerioFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
ZFIN:ZDB-GENE-070705-534Danio rerioFrom_analysisEnsEMBL-Compara
OMA
OrthoInspector
ZFIN:ZDB-GENE-080116-1Danio rerioFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
ZFIN:ZDB-GENE-051127-5Danio rerioFrom_analysisEnsEMBL-Compara
OMA
OrthoInspector
ZFIN:ZDB-GENE-080818-4Danio rerioFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-121120-2Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-030616-586Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:11063Homo sapiensFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:11065Homo sapiensFrom_analysisEnsEMBL-Compara
OMA
OrthoInspector
HGNC:11064Homo sapiensFrom_analysisEnsEMBL-Compara
OMA
OrthoInspector
HGNC:11066Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:11058Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
MGI:1298205Mus musculusFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
MGI:1337120Mus musculusFrom_analysisEnsEMBL-Compara
OMA
OrthoInspector
MGI:1347355Mus musculusFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
MGI:1355323Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
MGI:1858261Mus musculusFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
MGI:2142598Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoInspector
SonicParanoid
RGD:620639Rattus norvegicusFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:619902Rattus norvegicusFrom_analysisEnsEMBL-Compara
OMA
OrthoInspector
RGD:619904Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:621672Rattus norvegicusFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
RGD:1309193Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoInspector
SonicParanoid
Paralog (12)
Structured_descriptionConcise_descriptionaat-1 encodes an amino acid transporter catalytic subunit; when co-expressed in Xenopus oocytes with the ATG-2 glycoprotein subunit, AAT-1 is able to facilitate amino acid uptake and exchange, showing a relatively high affinity for small and some large neutral amino acids; in addition, AAT-1 is able to covalently associate with ATG-2 or ATG-1 to form heterodimers in the Xenopus expression system; when co-expressed with ATG-2, AAT-1 localizes to the cell surface of oocytes, but when expressed alone or with ATG-1, AAT-1 localizes intracellularly.Paper_evidenceWBPaper00006408
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated02 Mar 2006 00:00:00
Automated_descriptionContributes to L-amino acid transmembrane transporter activity. Involved in amino acid transmembrane transport. Located in plasma membrane. Part of amino acid transport complex. Expressed in egg-laying apparatus; head motor neurons; and tail. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); glioblastoma; and lysinuric protein intolerance. Is an ortholog of human SLC7A8 (solute carrier family 7 member 8).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_model (26)
Molecular_infoCorresponding_CDSF27C8.1
Corresponding_transcriptF27C8.1.1
Other_sequence (63)
Associated_feature (11)
Experimental_infoRNAi_resultWBRNAi00087502Inferred_automaticallyRNAi_primary
WBRNAi00045732Inferred_automaticallyRNAi_primary
WBRNAi00031488Inferred_automaticallyRNAi_primary
WBRNAi00113611Inferred_automaticallyRNAi_primary
WBRNAi00013991Inferred_automaticallyRNAi_primary
WBRNAi00112392Inferred_automaticallyRNAi_primary
Expr_patternChronogram1135
Expr5887
Expr15194
Expr1023109
Expr1030001
Expr1149639
Expr2009064
Expr2027300
Drives_constructWBCnstr00003611
WBCnstr00037804
WBCnstr00042037
Construct_productWBCnstr00037804
WBCnstr00042037
AntibodyWBAntibody00000717
Microarray_results (18)
Expression_clusterWBPaper00005700:transmembrane_protein
WBPaper00029359_1142
WBPaper00029359_1217
WBPaper00029359_1280
WBPaper00029359_1444
WBPaper00029359_1504
WBPaper00029359_1604
WBPaper00031040:TGF-beta_adult_upregulated
WBPaper00032425:up_in_rde-4
WBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:A-class-motor-neurons_larva_enriched
WBPaper00037950:A-class-motor-neurons_larva_SelectivelyEnriched
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:excretory-cell_larva_enriched
WBPaper00037950:excretory-cell_larva_SelectivelyEnriched
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_larva_SelectivelyEnriched
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00042194:nhr-114(RNAi)_downregulated
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00042561:smgl-1(RNAi)_downregulated
WBPaper00044246:pgrn-1_ced-3_ced-1_downregulated
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044736:oscillating_dev_expression
WBPaper00044760:somatic_specific
WBPaper00045401:N.parisii_64h_downregulated
WBPaper00045521:Spermatogenic
WBPaper00045861:ash-2(tm1095)_downregulated
WBPaper00046337:polysomal_daf-2_vs_daf-2;daf-16_downregulated
WBPaper00046337:polysomal_N2_vs_daf-2_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00047131:daf-2(e1370)_upregulated_N2-background
WBPaper00047132:glp-1(ts)-25C_upregulated
WBPaper00048988:neuron_expressed
WBPaper00049018:swsn-2.2(RNAi)_downregulated
WBPaper00049217:DAF-16_upregulated
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
WBPaper00050080:rbr-2(tm3141)_upregulated
WBPaper00050332:skn-1(RNAi)_downregulated
WBPaper00050370:dpy-21(e428)_L3_downregulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051021:4-bromodiphenyl-ether_downregulated
WBPaper00051305:vit-2(ac3)_downregulated
WBPaper00051404:alg-1(gk214)_downregulated
WBPaper00051404:alg-2(ok304)_downregulated
WBPaper00051558:aging_regulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053318:mir-71(n4115)_downregulated_mRNA
WBPaper00053321:PGCs_depleted_NuGen
WBPaper00053388:dauer_regulated_Cluster3
WBPaper00053615:SMO-1_target
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00054493:hpl-2(tm1489)_upregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055386:daf-2(e1370)_upregulated
WBPaper00055482:pmt-2(RNAi)_downregulated
WBPaper00055827:daf-2(e1370)_upregulated
WBPaper00055971:nhl-2(ok818)_20C_upregulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056034:pals-22(jy3)_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056169:rrf-3(pk1426)_downregulated_L4
WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056550:ceh-60(ok1485)_upregulated_AdultDay1
WBPaper00056550:ceh-60(ok1485)_upregulated_AdultDay4
WBPaper00056809:smn-1(ok355)_downregulated
WBPaper00056826:hmc_biased
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057068:ints-4(RNAi)_downregulated
WBPaper00057068:numr-1(RNAi)_downregulated
WBPaper00057154:HeatShock_downregulated_miRNA-target
WBPaper00057154:HeatShock_upregulated_mRNA
WBPaper00057265:metaformin_upregulated_OP50
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058691:set-2(bn129)_upregulated
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059421:daf-3(mgDf90)_downregulated
WBPaper00059728:5ug_cholesterol_upregulated
WBPaper00059739:hira-1(gk835598)_downregulated_L4
WBPaper00059839:S.maltophilia_regulated
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060084:cco-1(RNAi)_downregulated_N2
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060399:CoCl2_6hr_upregulated_N2
WBPaper00060661:sensory-neuron_enriched
WBPaper00060764:swsn-1(os22ts)_downregulated
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00060951:mrpl-2(osa3)_downregulated
WBPaper00061007:HB101_upregulated
WBPaper00061007:HB115_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061203:let-418(n3536)_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:Excretory_gland
WBPaper00061340:g1A
WBPaper00061340:g1A_g1P
WBPaper00061340:g1P
WBPaper00061340:mc1
WBPaper00061340:mc2
WBPaper00061340:mc3
WBPaper00061340:M_cell
WBPaper00061340:pm1_pm2
WBPaper00061340:pm6
WBPaper00061341:28C_24h_upregulated
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
WBPaper00061527:R07G3.8_9125-ric-4_17408
WBPaper00061530:nhr-49(e2144)_downregulated
WBPaper00061651:RMH_enriched
WBPaper00061753:csr-1(tor159)_upregulated_25C
WBPaper00061902:camt-1(ok515)_regulated_RMG
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062440:crh-1(n3315)_downregulated
WBPaper00062446:nhr-8(hd117)_upregulated
WBPaper00062520:qui-1(db104)_upregulated
WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064532:pals-22(jy3)_downregulated
WBPaper00064632:daf-2(e1370)_upregulated_intestine
WBPaper00064716:paraquat_downregulated
WBPaper00064727:daf-2(e1370)_upregulated
WBPaper00064769:him-17(me24)_upregulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065258:anchor-cell_depleted
WBPaper00065373:Cisplatin_downregulated_WT
WBPaper00065373:sek-1(km4)_downregulated_Ref
WBPaper00065841:9_0
WBPaper00065841:9_1
WBPaper00065841:9_2
WBPaper00065841:15_0
WBPaper00065841:27_0
WBPaper00065841:56_0
WBPaper00065841:89_0
WBPaper00065841:146_0
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065984:pals-17(syb3980)_downregulated
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066085:sin-3(tm1276)_upregulated
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
cgc4489_group_14
WBPaper00024671:AFD_AWB_vs_unsorted_upregulated
WBPaper00024671:AFD_vs_AWB_downregulated
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00029437:dcr-1_upregulated
WBPaper00030839:Embryo_Pan_Neuronal
WBPaper00031003:0hr_muscle_depleted
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00034661:AgNPs_downregulated
WBPaper00035479:daf-16(RNAi)_downregulated
WBPaper00035588:alg-1(-)_upregulated
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00036286:Pattern_C
WBPaper00038172:crh-1null_down_regulated
WBPaper00038172:tax-6null_down_regulated
WBPaper00038231:Cry5B_1.5-fold_downregulated
WBPaper00038231:Cry5B_2-fold_downregulated
WBPaper00038304:octr-1_regulated
WBPaper00040184:hcf-1up_sir-2.1up_daf-2up
WBPaper00040210:Diazinon_24C_regulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040985:AIN-2_L4_intestine
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00044091:Bpseudomallei_repressed_8h
WBPaper00044091:Bpseudomallei_repressed_12h
WBPaper00045263:isp-1(qm150)_upregulated
WBPaper00045263:nuo-6(qm200)_upregulated
WBPaper00046083:ogt-1(ok1474)_OP50_downregulated
WBPaper00046083:pmk-1(km25)_OP50_downregulated
WBPaper00047070:N2_UV_downregulated
[cgc6390]:Cluster_B
Interaction (13)
Map_infoMapIVPosition4.33112Error0.001998
PositivePositive_cloneF27C8Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00006408
WBPaper00024381
WBPaper00035475
WBPaper00038491
WBPaper00042390
WBPaper00045095
WBPaper00050950
WBPaper00053894
WBPaper00055090
WBPaper00060013
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene