WormBase Tree Display for Gene: WBGene00039142

WBGene00039142 SMap: S_parent: Sequence: cb25.fpc4152
  Identity: Version: 2
    Name: CGC_name: Cbr-aat-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG20050
      Molecular_name: CBG20050
        CBG20050.1
        CBP04687
      Other_name: CBG_20050 Accession_evidence: NDB HE601481
      Public_name: Cbr-aat-1
    DB_info: Database: NDB locus_tag CBG_20050
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:08 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-aat-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: aat
    Allele (18)
    RNASeq_FPKM: WBls:0000002 18.2911 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        18.6012 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        20.8802 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        25.7483 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        17.6228 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        18.4461 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        7.85077 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 13.1128 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        13.5083 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        13.9037 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        12.2956 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        9.87037 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 51.6879 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        55.0171 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        58.3463 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        53.7572 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        56.1793 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        58.158 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        58.9473 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 (12)
      WBls:0000027 10.0086 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        1.16602 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        25.5179 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        3.34179 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        10.1487 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        11.7453 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        16.9556 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 26.1006 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 21.9952 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        22.0534 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        24.6088 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        27.1642 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        33.7149 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        5.04812 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
      WBls:0000041 10.555 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        12.8473 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        14.7926 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        30.0265 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        8.034 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        8.26273 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        10.7781 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        11.8127 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        15.1724 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        21.0857 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 11.5591 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        11.5674 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        13.0564 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        14.2459 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        14.313 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        21.1361 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        13.6511 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        15.0604 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        18.7973 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 17.1688 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        19.4181 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        17.7299 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        21.5612 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00142618
      00142619
      00142620
    Ortholog (34)
    Paralog (13)
    Structured_description: Automated_description: Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans aat-1. In C. elegans, aat-1 is involved in amino acid transmembrane transport. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG20050
    Corresponding_CDS_history: CBG20050:bp194
    Corresponding_transcript: CBG20050.1
    Other_sequence (72)
  Experimental_info: Expr_pattern: Expr1064449
    Microarray_results: GPL8303_CB6_WBGene00039142_A
      GPL8303_CB6_WBGene00039142_B
      GPL14143_CBG20050_1059-1118_0.909_7_C
      GPL14143_CBG20050_1236-1295_0.904_8_A
      GPL14143_CBG20050_1363-1422_0.935_2_B
    Expression_cluster: WBPaper00059178:Cbr-spr-4(gu163)_upregulated
  Method: Gene