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WormBase Tree Display for Gene: WBGene00113122

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Name Class

WBGene00113122SMapS_parentSequencePPA_ChrX
IdentityVersion11
NameCGC_namePpa-unc-6From_analysisInferred_from_orthology
Sequence_namePPA23568
Molecular_namePPA23568
PPA23568.1
PP57265
Other_nameGENEPREDICTION_SNAP300000080463
GENEPREDICTION_SNAP300000080464
GENEPREDICTION_SNAP300000080465
UMA-S344-3.38Person_evidenceWBPerson606
Public_namePpa-unc-6
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:06WBPerson4055EventImportedfrom NGASP
217 Nov 2017 15:19:42WBPerson4055Name_changeCGC_namePpa-unc-6
324 Nov 2017 09:46:51WBPerson4055EventAcquires_mergeWBGene00113123
424 Nov 2017 09:46:51WBPerson4055EventAcquires_mergeWBGene00113124
524 Nov 2017 09:46:52WBPerson4055EventAcquires_mergeWBGene00203257
608 Feb 2019 15:42:29WBPerson1983Name_changeCGC_nameRemoved
708 May 2019 10:09:25WBPerson1983Name_changeCGC_namePpa-unc-6
804 Feb 2020 15:43:57WBPerson1983Name_changeCGC_nameRemoved
904 Jun 2020 14:38:21WBPerson1983Name_changeCGC_namePpa-unc-6
1028 May 2021 19:05:21WBPerson1983Name_changeCGC_nameRemoved
1128 Jul 2021 11:12:29WBPerson1983Name_changeCGC_namePpa-unc-6
Acquires_mergeWBGene00113123
WBGene00113124
WBGene00203257
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
RNASeq_FPKMWBls:00000321.21582From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010.883883From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
1.21582From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
1.43583From_analysisRNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
OrthologWBGene00119812Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00211653Caenorhabditis japonicaFrom_analysisInparanoid_8
WBGene00148673Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00032168Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00224249Brugia malayiFrom_analysisWormBase-Compara
WBGene00006746Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00242009Onchocerca volvulusFrom_analysisWormBase-Compara
CBOVI.g3278Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g10853Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g21093Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g15050Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g2767Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g20643Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g9212Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g10840Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g375Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g10862Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00160.g5922Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_05761.g19817Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-unc-6Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold570.g4243Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00707.g14621Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_00273Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_024674Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g01017Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g4021Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0196500Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00051410Caenorhabditis remaneiFrom_analysisWormBase-Compara
chrX_pilon.g19321Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00266163Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00297119Trichuris murisFrom_analysisWormBase-Compara
WBGene00300156Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00095695Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00098403Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00099475Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00104946Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00109058Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00276112Pristionchus pacificusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: WW domain; Laminin, N-terminal; UNC-6/NTR/C345C module; Laminin-type EGF domain; Tissue inhibitor of metalloproteinases-like, OB-fold; Netrin module, non-TIMP type; Laminin EGF domain; Laminin N-terminal (Domain VI); and WW domain superfamily. Is an ortholog of C. elegans unc-6. In C. elegans, unc-6 is involved in several processes, including axon guidance; regulation of locomotion; and sex differentiation.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA23568
Corresponding_transcriptPPA23568.1
Other_sequenceMIC02438_1
EY466445.1
FC815460.1
ACC17601_1
SR01905
JI170154.1
SRC02207_1
MI02920
FC810088.1
Acan_isotig10408
EY460685.1
CRC02888_1
FC553194.1
BXC06240_1
FC550368.1
CR06517
Dviv_isotig24727
BE217664.1
Experimental_infoMicroarray_resultsGPL14372_Probes_26163
GPL14372_Probes_26164
GPL14372_Probes_26165
GPL14372_Probes_26167
GPL14372_Probes_34909
GPL14372_Probes_34910
GPL14372_Probes_80847
GPL14372_Probes_80854
GPL14372_Probes_80855
GPL14372_Probes_80862
GPL14372_Probes_80863
GPL14372_Probes_80864
Expression_clusterWBPaper00041207:PP_dauer_down
Remark[190208 pad] The CGC name Ppa-unc-6 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[200204 pad] The CGC name Ppa-unc-6 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[210528 pad] The CGC name Ppa-unc-6 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene