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WormBase Tree Display for Gene: WBGene00035291

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Name Class

WBGene00035291SMapS_parentSequencecb25.fpc3857b
IdentityVersion2
NameCGC_nameCbr-unc-40From_analysisInferred_from_orthology
Sequence_nameCBG14917
Molecular_nameCBG14917a
CBG14917a.1
CBP45241
CBG14917b
CBP42473
CBG14917c
CBP41214
CBG14917d
CBP38503
CBG14917b.1
CBG14917c.1
CBG14917d.1
Other_nameCBG_14917Accession_evidenceNDBHE600904
Public_nameCbr-unc-40
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:04WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-unc-40
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
AlleleWBVar00121867
WBVar00121868
RNASeq_FPKMWBls:000000216.2973From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.88627From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
20.9375From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
26.0681From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
10.5129From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
14.8512From_analysisRNASeq.briggsae.WBls:0000002.control_mean
15.7252From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:0000003107.008From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
91.9239From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
99.466From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
102.052From_analysisRNASeq.briggsae.WBls:0000003.control_mean
107.223From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000475.5418From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
76.0683From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
76.5947From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
76.3746From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
77.7097From_analysisRNASeq.briggsae.WBls:0000004.control_mean
79.2926From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
80.745From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:00000240From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
15.1069From_analysisRNASeq.briggsae.WBls:0000024.control_mean
15.9557From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
17.0981From_analysisRNASeq.briggsae.WBls:0000024.control_median
18.2405From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
19.9646From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
6.2668From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
WBls:00000271.4261From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
2.13317From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
22.6885From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
8.74926From_analysisRNASeq.briggsae.WBls:0000027.control_mean
10.689From_analysisRNASeq.briggsae.WBls:0000027.control_mean
16.5082From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
9.32069From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:000003523.3868From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.596291From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
7.24829From_analysisRNASeq.briggsae.WBls:0000038.control_mean
8.9797From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
9.24279From_analysisRNASeq.briggsae.WBls:0000038.control_median
9.50589From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
9.9113From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004114.185From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
19.6815From_analysisRNASeq.briggsae.WBls:0000041.control_mean
21.3251From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
21.361From_analysisRNASeq.briggsae.WBls:0000041.control_median
21.3968From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
21.8193From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
15.072From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
16.5005From_analysisRNASeq.briggsae.WBls:0000041.control_mean
18.1985From_analysisRNASeq.briggsae.WBls:0000041.control_median
5.20494From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006318.0459From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
18.5714From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
19.193From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
20.5684From_analysisRNASeq.briggsae.WBls:0000063.control_mean
21.7604From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
25.2711From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
17.228From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
18.8822From_analysisRNASeq.briggsae.WBls:0000063.control_median
20.0116From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010119.193From_analysisRNASeq.briggsae.total_over_all_stages.control_median
24.8477From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
18.8822From_analysisRNASeq.briggsae.total_over_all_stages.control_median
29.7038From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
OrthologWBGene00006776Caenorhabditis elegansFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00060358Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00162859Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00160417Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00126223Caenorhabditis japonicaFrom_analysisInparanoid_8
CBOVI.g10693Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g6080Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g6416Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g9390Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g9393Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g17082Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g7666Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g1487Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g18061Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g9327Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g23251Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00095.g4203Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00095.g4204Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_13295.g24171Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-unc-40Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15165Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00491.g12060Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_06376Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_001309Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g06699Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g17054Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10282300Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00226094Brugia malayiFrom_analysisWormBase-Compara
chrI_pilon.g978Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00210117Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00238359Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00113211Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00262661Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00297116Trichuris murisFrom_analysisWormBase-Compara
WBGene00301123Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00024762Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00025103Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00026220Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00026230Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027225Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027604Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029985Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032156Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032651Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034790Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035699Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035745Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036463Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036675Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036677Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037279Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00039556Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040420Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Fibronectin type III superfamily; Immunoglobulin I-set domain; Immunoglobulin I-set; Fibronectin type III; Immunoglobulin-like fold; Immunoglobulin subtype 2; Immunoglobulin domain; Immunoglobulin-like domain superfamily; Fibronectin type III domain; and Immunoglobulin subtype. Is an ortholog of C. elegans unc-40. In C. elegans, unc-40 is involved in several processes, including axon guidance; regulation of locomotion; and sex differentiation.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG14917a
CBG14917b
CBG14917c
CBG14917d
Corresponding_CDS_historyCBG14917:bp194
CBG14917:bp255
Corresponding_transcriptCBG14917a.1
CBG14917b.1
CBG14917c.1
CBG14917d.1
Other_sequenceJI164718.1
HC06273
Oden_isotig09046
Dviv_isotig07003
Oden_isotig09047
JI215953.1
CRC04451_1
CBC07121_1
CR08971
Dviv_isotig07005
ACC32859_1
Dviv_isotig07006
Dviv_isotig07004
Oden_isotig09048
JI164672.1
CBC04695_1
JI228357.1
DVC00509_1
ACC39883_1
FC547675.1
Oden_isotig09049
Oden_isotig26324
FC554101.1
Acan_isotig08978
EV852868.1
CRC08838_1
PPC04392_1
CR00445
HCC02918_1
Dviv_isotig07002
JI211837.1
Tcir_isotig14780
Tcol_isotig20894
Experimental_infoExpr_patternExpr1062773
Microarray_resultsGPL8303_CB6_WBGene00035291_A
GPL8303_CB6_WBGene00035291_B
GPL14143_CBG14917_1940-1999_0.789_110_B
GPL14143_CBG14917_2902-2961_0.844_41_A
GPL14143_CBG14917_3796-3855_0.598_535_C
MethodGene