WormBase Tree Display for Variation: WBVar00121867

WBVar00121867 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00121867
    Other_name: cbs57388
    HGVSg: chrI:g.3519850C>G
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857b
    Flanking_sequences: tcgttttctttgctgattgatatccattctttcttccaccgccgccggat gtttcaagcagcacatgataataagaatgagtgtcaagatgagaatcaga
    Mapping_target: cb25.fpc3857b
    Type_of_mutation: Substitution: C G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GATC BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI 491 393 103 13
        CCNNNNNNNGG Bsc4I, BseLI, BsiYI, BslI 630 305 47 18
      Polymorphic_strain_digest: GATC BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI 393 13
        CCNNNNNNNGG Bsc4I, BseLI, BsiYI, BslI 432 305 198 47 18
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00035290
      WBGene00035291
    Transcript: CBG14916.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG14916.1:c.*1633C>G
        cDNA_position: 2200
        Exon_number: 10/20
      CBG14916.2 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG14916.2:c.*1633C>G
        cDNA_position: 2200
        Exon_number: 10/19
      CBG14916.3 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG14916.3:c.*1396C>G
        cDNA_position: 1963
        Exon_number: 9/19
      CBG14916.4 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG14916.4:c.*1396C>G
        cDNA_position: 1963
        Exon_number: 9/18
      CBG14917a.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG14917a.1:c.3326G>C
        HGVSp: CBP45241.1:p.Arg1109Pro
        cDNA_position: 3326
        CDS_position: 3326
        Protein_position: 1109
        Exon_number: 10/14
        Codon_change: cGa/cCa
        Amino_acid_change: R/P
      CBG14917b.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG14917b.1:c.3413G>C
        HGVSp: CBP42473.1:p.Arg1138Pro
        cDNA_position: 3413
        CDS_position: 3413
        Protein_position: 1138
        Exon_number: 11/15
        Codon_change: cGa/cCa
        Amino_acid_change: R/P
      CBG14917c.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG14917c.1:c.3413G>C
        HGVSp: CBP41214.1:p.Arg1138Pro
        cDNA_position: 3413
        CDS_position: 3413
        Protein_position: 1138
        Exon_number: 11/16
        Codon_change: cGa/cCa
        Amino_acid_change: R/P
      CBG14917d.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG14917d.1:c.3326G>C
        HGVSp: CBP38503.1:p.Arg1109Pro
        cDNA_position: 3326
        CDS_position: 3326
        Protein_position: 1109
        Exon_number: 10/15
        Codon_change: cGa/cCa
        Amino_acid_change: R/P
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP