WormBase Tree Display for Gene: WBGene00019154
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WBGene00019154 | SMap | S_parent | Sequence | H04M03 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | glf-1 | Paper_evidence | WBPaper00025248 | |||
Sequence_name | H04M03.4 | ||||||
Molecular_name | H04M03.4 | ||||||
H04M03.4.1 | |||||||
CE38614 | |||||||
Other_name | CELE_H04M03.4 | Accession_evidence | NDB | BX284604 | |||
Public_name | glf-1 | ||||||
DB_info | Database | AceView | gene | 4G653 | |||
WormQTL | gene | WBGene00019154 | |||||
WormFlux | gene | WBGene00019154 | |||||
NDB | locus_tag | CELE_H04M03.4 | |||||
Panther | gene | CAEEL|WormBase=WBGene00019154|UniProtKB=G5ECS4 | |||||
family | PTHR42923 | ||||||
NCBI | gene | 177358 | |||||
RefSeq | protein | NM_068483.5 | |||||
TREEFAM | TREEFAM_ID | TF318619 | |||||
TrEMBL | UniProtAcc | G5ECS4 | |||||
UniProt_GCRP | UniProtAcc | G5ECS4 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | glf | ||||||
Allele (44) | |||||||
Strain | WBStrain00036541 | ||||||
WBStrain00004715 | |||||||
WBStrain00004716 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00012419 | ||||||
00012420 | |||||||
00012421 | |||||||
00012422 | |||||||
00012423 | |||||||
00012424 | |||||||
00124063 | |||||||
Ortholog (34) | |||||||
Paralog | WBGene00000137 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00000138 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00000139 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00005010 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00011615 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00016061 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | glf-1 encodes a UDP-galactopyranose mutase predicted to synthesize galactofuranose (Gal(f)) as a nucleotide sugar (UDP-Gal(f)); recombinant GLF-1 has biochemical activity either in vivo (expressed in E. coli) or in vitro; orthologs of GLF-1 are found in the urochordates Halocynthia and Ciona. | Paper_evidence | WBPaper00025248 | |||
Curator_confirmed | WBPerson1843 | ||||||
WBPerson567 | |||||||
Date_last_updated | 28 Oct 2009 00:00:00 | ||||||
Automated_description | Enables UDP-galactopyranose mutase activity. Involved in polysaccharide biosynthetic process. Located in cytoplasm. Expressed in hypodermis; muscle cell; and neurons. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | H04M03.4 | |||||
Corresponding_CDS_history | H04M03.4:wp143 | ||||||
Corresponding_transcript | H04M03.4.1 | ||||||
Other_sequence (49) | |||||||
Associated_feature | WBsf996618 | ||||||
WBsf1017440 | |||||||
WBsf228345 | |||||||
WBsf228346 | |||||||
WBsf228347 | |||||||
Experimental_info | RNAi_result (18) | ||||||
Expr_pattern (9) | |||||||
Drives_construct | WBCnstr00005811 | ||||||
WBCnstr00005812 | |||||||
WBCnstr00005813 | |||||||
WBCnstr00011370 | |||||||
WBCnstr00013528 | |||||||
WBCnstr00026022 | |||||||
Construct_product | WBCnstr00005811 | ||||||
WBCnstr00005812 | |||||||
WBCnstr00005813 | |||||||
WBCnstr00013528 | |||||||
WBCnstr00026022 | |||||||
Microarray_results (19) | |||||||
Expression_cluster (306) | |||||||
Interaction (157) | |||||||
Map_info | Map | IV | Position | 2.45941 | Error | 0.001904 | |
Positive | Positive_clone | H04M03 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (13) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |