WormBase Tree Display for Gene: WBGene00017500
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WBGene00017500 | SMap | S_parent | Sequence | F15E11 | ||
---|---|---|---|---|---|---|
Identity | Version | 2 | ||||
Name | CGC_name | pud-2.2 | Person_evidence | WBPerson143 | ||
Sequence_name | F15E11.14 | |||||
Molecular_name | F15E11.14 | |||||
F15E11.14.1 | ||||||
CE16999 | ||||||
Other_name (2) | ||||||
Public_name | pud-2.2 | |||||
DB_info | Database | AceView | gene | 5C801 | ||
WormQTL | gene | WBGene00017500 | ||||
WormFlux | gene | WBGene00017500 | ||||
NDB | locus_tag | CELE_F15E11.14 | ||||
NCBI | gene | 178710 | ||||
RefSeq | protein | NM_071237.1 | ||||
TREEFAM | TREEFAM_ID | TF319694 | ||||
TrEMBL | UniProtAcc | G5EBF3 | ||||
UniProt_GCRP | UniProtAcc | G5EBF3 | ||||
Species | Caenorhabditis elegans | |||||
History | Version_change (2) | |||||
Status | Live | |||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | pud | |||||
Allele (19) | ||||||
RNASeq_FPKM (74) | ||||||
Ortholog (16) | ||||||
Paralog | WBGene00017490 | Caenorhabditis elegans | From_analysis | TreeFam | ||
WormBase-Compara | ||||||
WBGene00017498 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WBGene00017499 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WBGene00017501 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WBGene00044489 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WBGene00044490 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WBGene00021236 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Structured_description | Concise_description | pud-2.2, along with pud-2.1, encodes a 17.4 kDa protein (CE16999) with unknown function that is seven-fold more abundant in glp-1 mutant hermaphrodites (which lack a germline) than in normal hermaphrodites; in addition, the protein products of PUD-2.2/PUD-2.1 are more abundant in daf-2 mutant vs. wild-type adults during a temperature shift from 15 to 25 degrees C; pud-2.2(RNAi) animals have no obvious mutant phenotype (i.e., they have no obvious defect in fertility or germline maintenance); the PUD-2.2/PUD-2.1 proteins belong to a nematode-specific family including the paralogs PUD-1.1, PUD-1.2, PUD-3, and PUD-4. | Paper_evidence | WBPaper00006020 | ||
WBPaper00030894 | ||||||
Curator_confirmed | WBPerson1843 | |||||
Date_last_updated | 12 Jun 2015 00:00:00 | |||||
Automated_description | Expressed in hypodermis. Is predicted to encode a protein with the following domains: Up-Regulated in long-lived daf-2 and Up-regulated in Daf-2. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | F15E11.14 | ||||
Corresponding_transcript | F15E11.14.1 | |||||
Associated_feature | WBsf999496 | |||||
WBsf1019289 | ||||||
WBsf231502 | ||||||
Experimental_info | RNAi_result | WBRNAi00070096 | Inferred_automatically | RNAi_primary | ||
WBRNAi00044734 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00044722 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00013371 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Expr11081 | |||||
Expr1148700 | ||||||
Expr2015180 | ||||||
Drives_construct | WBCnstr00017878 | |||||
WBCnstr00017881 | ||||||
WBCnstr00018112 | ||||||
WBCnstr00027252 | ||||||
Construct_product | WBCnstr00017876 | |||||
WBCnstr00017878 | ||||||
WBCnstr00017881 | ||||||
WBCnstr00018112 | ||||||
WBCnstr00027252 | ||||||
Antibody | WBAntibody00001279 | |||||
Microarray_results (19) | ||||||
Expression_cluster (269) | ||||||
Interaction | WBInteraction000520383 | |||||
WBInteraction000554693 | ||||||
WBInteraction000554695 | ||||||
WBInteraction000556766 | ||||||
WBInteraction000556768 | ||||||
WBInteraction000581022 | ||||||
WBInteraction000583424 | ||||||
Map_info | Map | V | Position | -14.8758 | ||
Positive | Positive_clone | F15E11 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Pseudo_map_position | ||||||
Reference | WBPaper00024325 | |||||
WBPaper00027024 | ||||||
WBPaper00030894 | ||||||
WBPaper00037428 | ||||||
WBPaper00046929 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |