WormBase Tree Display for Gene: WBGene00012781
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WBGene00012781 | SMap | S_parent | Sequence | Y43C5A | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | nspd-7 | Person_evidence | WBPerson1983 | |||
Sequence_name | Y43C5A.1 | ||||||
Molecular_name | Y43C5A.1 | ||||||
Y43C5A.1.1 | |||||||
CE19150 | |||||||
Other_name | CELE_Y43C5A.1 | Accession_evidence | NDB | BX284604 | |||
Public_name | nspd-7 | ||||||
DB_info | Database | AceView | gene | 4L34 | |||
WormQTL | gene | WBGene00012781 | |||||
WormFlux | gene | WBGene00012781 | |||||
NDB | locus_tag | CELE_Y43C5A.1 | |||||
Panther | gene | CAEEL|WormBase=WBGene00012781|UniProtKB=Q9XXF2 | |||||
family | PTHR35375 | ||||||
NCBI | gene | 177910 | |||||
RefSeq | protein | NM_069481.6 | |||||
TREEFAM | TREEFAM_ID | TF319437 | |||||
TrEMBL | UniProtAcc | Q9XXF2 | |||||
UniProt_GCRP | UniProtAcc | Q9XXF2 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | nspd | ||||||
Allele (15) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (87) | |||||||
Paralog | WBGene00010633 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00017808 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00017386 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00020715 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||
WormBase-Compara | |||||||
WBGene00021280 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00043147 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||
WormBase-Compara | |||||||
WBGene00022754 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00020860 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00016058 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
Structured_description | Automated_description | Enriched in intestine; sperm; and in male based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and age-1 based on microarray and RNA-seq studies. Is affected by twenty-four chemicals including Ethanol; methylmercury hydroxide; and nicotinic acid based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function DUF780, Caenorhabditis species and Caenorhabditis elegans protein of unknown function (DUF780). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y43C5A.1 | |||||
Corresponding_transcript | Y43C5A.1.1 | ||||||
Other_sequence | FG621270.1 | ||||||
Associated_feature | WBsf997580 | ||||||
WBsf230707 | |||||||
Experimental_info | RNAi_result (5) | ||||||
Expr_pattern | Expr1011315 | ||||||
Expr1159933 | |||||||
Expr2014484 | |||||||
Expr2032723 | |||||||
Drives_construct | WBCnstr00029845 | ||||||
Construct_product | WBCnstr00029845 | ||||||
Microarray_results (14) | |||||||
Expression_cluster (220) | |||||||
Interaction (107) | |||||||
Map_info | Map | IV | Position | 4.56484 | |||
Positive | Positive_clone | Y43C5A | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |