WormBase Tree Display for Gene: WBGene00003729
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WBGene00003729 | SMap | S_parent | Sequence | CHROMOSOME_X | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | nhx | ||||||
Allele (72) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (18) | |||||||
Ortholog (47) | |||||||
Paralog | WBGene00003736 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
WBGene00003733 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00003735 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00003731 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00003943 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00003730 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00003734 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00003732 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
Structured_description | Concise_description | nhx-1 encodes a sodium/proton exchanger expressed intracellularly within hypodermal and muscle cells; NHX-1 is required for embryonic viability, and is thought to prevent intracellular acidification by catalysing the electroneutral exchange of vesicular sodium for an intracellular proton. | Paper_evidence | WBPaper00004651 | |||
WBPaper00005421 | |||||||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to enable potassium:proton antiporter activity and sodium:proton antiporter activity. Predicted to be involved in potassium ion transmembrane transport; regulation of intracellular pH; and sodium ion import across plasma membrane. Predicted to be located in plasma membrane. Expressed in AIYL; AIYR; hypodermis; intestine; and muscle cell. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | B0395.1 | |||||
Corresponding_CDS_history (2) | |||||||
Corresponding_transcript | B0395.1.1 | ||||||
B0395.1.2 | |||||||
Other_sequence (17) | |||||||
Associated_feature | WBsf648838 | ||||||
WBsf648839 | |||||||
WBsf663673 | |||||||
WBsf236825 | |||||||
Experimental_info | RNAi_result | WBRNAi00039018 | Inferred_automatically | RNAi_primary | |||
WBRNAi00024396 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00024397 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00027146 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00009746 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00001533 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr2232 | ||||||
Expr2240 | |||||||
Expr10075 | |||||||
Expr1015368 | |||||||
Expr1031741 | |||||||
Expr1143180 | |||||||
Expr2014253 | |||||||
Expr2032493 | |||||||
Drives_construct | WBCnstr00010711 | ||||||
WBCnstr00010720 | |||||||
WBCnstr00015047 | |||||||
WBCnstr00035912 | |||||||
Construct_product | WBCnstr00010720 | ||||||
WBCnstr00035912 | |||||||
Microarray_results (19) | |||||||
Expression_cluster (110) | |||||||
Interaction | WBInteraction000134079 | ||||||
WBInteraction000362601 | |||||||
WBInteraction000410939 | |||||||
Map_info | Map | X | Position | 23.335 | Error | 0.165455 | |
Positive | Positive_clone | B0395 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference (4) | |||||||
Remark | Sequence connection from [Nehrke K, Melvin J] | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |