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WormBase Tree Display for Gene: WBGene00022754

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Name Class

WBGene00022754SMapS_parentSequenceZK484
Identity (6)
Gene_infoBiotypeSO:0001217
Gene_classnspd
AlleleWBVar01498782
WBVar00537250
WBVar01499786
WBVar01499054
WBVar00641919
WBVar00641920
WBVar00641921
WBVar01498959
WBVar01500249
RNASeq_FPKM (74)
OrthologWBGene00037331Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00056605Caenorhabditis remaneiFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00051079Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00039798Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00057463Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00057292Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00058098Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WBGene00057476Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00108752Pristionchus pacificusFrom_analysisOMA
WBGene00132634Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00134984Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00127116Caenorhabditis japonicaFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00137025Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00141340Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00154820Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00158606Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00162485Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WBGene00063307Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00027837Caenorhabditis briggsaeFrom_analysisOMA
WBGene00037471Caenorhabditis briggsaeFrom_analysisOMA
WBGene00061696Caenorhabditis remaneiFrom_analysisOMA
TreeFam
WBGene00129669Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00157609Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00206737Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00209397Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00214546Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00212157Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00218217Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00070580Caenorhabditis remaneiFrom_analysisTreeFam
CSP21.g13650Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g8999Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g1026Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g11233Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g8784Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g19809Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g11611Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g18488Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g3744Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g8802Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g10189Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g16963Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g18304Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g19427Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g21288Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g25927Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g4282Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g6652Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g954Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g10573Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g10620Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g12081Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g5804Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g5908Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g1422Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g16779Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g20346Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g20347Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g5982Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g19813Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g5128Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g5708Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00071.g3405Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00392.g10200Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00978.g15206Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_15316.g24995Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_II.g4453Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_II.g4456Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_II.g6835Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_II.g7198Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g11213Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g17139Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00474.g11836Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_04402Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_05955Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_05967Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_13089Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_005908Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_005922Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_006111Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_011090Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_011095Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_019920Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_023075Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_025061Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_026048Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_30021400Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g1066Caenorhabditis elegansFrom_analysisWormBase-Compara
ParalogWBGene00010633Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00012781Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
WBGene00016058Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017386Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00017808Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00020715Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00020860Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00021280Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00043147Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in several structures, including AVK; amphid sheath cell; coelomocyte; intestine; and sperm based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and age-1 based on microarray; tiling array; and RNA-seq studies. Is affected by twenty-two chemicals including Ethanol; methylmercury hydroxide; and nicotinic acid based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function DUF780, Caenorhabditis species and Caenorhabditis elegans protein of unknown function (DUF780).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSZK484.8
Corresponding_transcriptZK484.8.1
Other_sequenceCBC01618_1
Associated_featureWBsf219540
Experimental_infoRNAi_resultWBRNAi00059452Inferred_automaticallyRNAi_primary
WBRNAi00004941Inferred_automaticallyRNAi_primary
WBRNAi00022620Inferred_automaticallyRNAi_primary
WBRNAi00038310Inferred_automaticallyRNAi_primary
Expr_patternExpr1162878
Expr2014478
Expr2032717
Drives_constructWBCnstr00024001
Construct_productWBCnstr00024001
Microarray_results (13)
Expression_cluster (241)
Interaction (195)
Map_infoMapIPosition0.781024
PositivePositive_cloneZK484Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene